Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq224 118 9e-21
seq8 118 9e-21
seq131 113 4e-19
seq1429 91.5 1e-12
seq1427 91.5 1e-12
seq36 91.5 1e-12
>seq224
Length=190040
Score = 118 bits (130), Expect = 9e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387
|| ||||| || | ||||| || ||||| |||| ||| |||| ||||| ||
Sbjct 57855 CAGATTTCCGCTTTCGTTTTGGGTAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAA 57796
Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447
|||| ||| | || || || ||||| || || || ||||| || | || ||||| ||
Sbjct 57795 AAAGTGACGCAGGCCGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCA 57736
Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507
|| || ||||| || ||||||||||| ||| | || || ||||| || || ||||| ||
Sbjct 57735 ACCAAGGATGCCGGTCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACC 57676
Query 550508 GCTGCTGCACTTGCATATGG 550527
|||||||| ||||| |||||
Sbjct 57675 GCTGCTGCCCTTGCCTATGG 57656
>seq8
Length=1553183
Score = 118 bits (130), Expect = 9e-21
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387
|| ||||| || | ||||| || ||||| |||| ||| |||| ||||| ||
Sbjct 763561 CAGATTTCCGCTTTCGTTTTGGGTAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAA 763502
Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447
|||| ||| | || || || ||||| || || || ||||| || | || ||||| ||
Sbjct 763501 AAAGTGACGCAGGCCGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCA 763442
Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507
|| || ||||| || ||||||||||| ||| | || || ||||| || || ||||| ||
Sbjct 763441 ACCAAGGATGCCGGTCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACC 763382
Query 550508 GCTGCTGCACTTGCATATGG 550527
|||||||| ||||| |||||
Sbjct 763381 GCTGCTGCCCTTGCCTATGG 763362
>seq131
Length=332952
Score = 113 bits (124), Expect = 4e-19
Identities = 124/163 (76%), Gaps = 4/163 (2%)
Strand=Plus/Minus
Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725
||||| |||||||| ||||| ||||| | |||||| |||| || | || |||||||||
Sbjct 235422 GATTTCTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACCTACGCTCTACCATT 235363
Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTA--AAGTTCATCGAGTCA 930783
||||| ||||| | || | || |||| || |||| | | || ||| | |
Sbjct 235362 ATTGGCGAATCAATTTGCCGCTTGCTAGAATTTTT--GAAGCACGATGTGATTCGTATAA 235305
Query 930784 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826
||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 235304 ATCATCTTGGTGATTGGGGCACACAATTTGGTATGTTAATTGC 235262
>seq1429
Length=2652
Score = 91.5 bits (100), Expect = 1e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|| ||||| || || || ||||| || || || ||||| || || || || |||||||||
Sbjct 798 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 739
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
|||||| ||||| || || || || || || || ||||| || || || || |||||
Sbjct 738 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 679
Query 550517 CTTGCATATGGACTTGATAA 550536
|| || ||||| || || ||
Sbjct 678 CTGGCCTATGGCCTGGACAA 659
>seq1427
Length=2652
Score = 91.5 bits (100), Expect = 1e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|| ||||| || || || ||||| || || || ||||| || || || || |||||||||
Sbjct 798 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 739
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
|||||| ||||| || || || || || || || ||||| || || || || |||||
Sbjct 738 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 679
Query 550517 CTTGCATATGGACTTGATAA 550536
|| || ||||| || || ||
Sbjct 678 CTGGCCTATGGCCTGGACAA 659
>seq36
Length=774725
Score = 91.5 bits (100), Expect = 1e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|| ||||| || || || ||||| || || || ||||| || || || || |||||||||
Sbjct 639229 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 639170
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
|||||| ||||| || || || || || || || ||||| || || || || |||||
Sbjct 639169 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 639110
Query 550517 CTTGCATATGGACTTGATAA 550536
|| || ||||| || || ||
Sbjct 639109 CTGGCCTATGGCCTGGACAA 639090
Score = 91.5 bits (100), Expect = 1e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456
|| ||||| || || || ||||| || || || ||||| || || || || |||||||||
Sbjct 641538 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 641597
Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516
|||||| ||||| || || || || || || || ||||| || || || || |||||
Sbjct 641598 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 641657
Query 550517 CTTGCATATGGACTTGATAA 550536
|| || ||||| || || ||
Sbjct 641658 CTGGCCTATGGCCTGGACAA 641677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029193668473150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |