Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq224 118 9e-21 seq8 118 9e-21 seq131 113 4e-19 seq1429 91.5 1e-12 seq1427 91.5 1e-12 seq36 91.5 1e-12 >seq224 Length=190040 Score = 118 bits (130), Expect = 9e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387 || ||||| || | ||||| || ||||| |||| ||| |||| ||||| || Sbjct 57855 CAGATTTCCGCTTTCGTTTTGGGTAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAA 57796 Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 |||| ||| | || || || ||||| || || || ||||| || | || ||||| || Sbjct 57795 AAAGTGACGCAGGCCGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCA 57736 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || ||||| || ||||||||||| ||| | || || ||||| || || ||||| || Sbjct 57735 ACCAAGGATGCCGGTCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACC 57676 Query 550508 GCTGCTGCACTTGCATATGG 550527 |||||||| ||||| ||||| Sbjct 57675 GCTGCTGCCCTTGCCTATGG 57656 >seq8 Length=1553183 Score = 118 bits (130), Expect = 9e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 550328 CAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAA 550387 || ||||| || | ||||| || ||||| |||| ||| |||| ||||| || Sbjct 763561 CAGATTTCCGCTTTCGTTTTGGGTAAGATGAAGGAAACTGCCGAGGCTTACCTTGGTGAA 763502 Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 |||| ||| | || || || ||||| || || || ||||| || | || ||||| || Sbjct 763501 AAAGTGACGCAGGCCGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCA 763442 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 || || ||||| || ||||||||||| ||| | || || ||||| || || ||||| || Sbjct 763441 ACCAAGGATGCCGGTCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACC 763382 Query 550508 GCTGCTGCACTTGCATATGG 550527 |||||||| ||||| ||||| Sbjct 763381 GCTGCTGCCCTTGCCTATGG 763362 >seq131 Length=332952 Score = 113 bits (124), Expect = 4e-19 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 ||||| |||||||| ||||| ||||| | |||||| |||| || | || ||||||||| Sbjct 235422 GATTTCTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACCTACGCTCTACCATT 235363 Query 930726 ATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTA--AAGTTCATCGAGTCA 930783 ||||| ||||| | || | || |||| || |||| | | || ||| | | Sbjct 235362 ATTGGCGAATCAATTTGCCGCTTGCTAGAATTTTT--GAAGCACGATGTGATTCGTATAA 235305 Query 930784 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 235304 ATCATCTTGGTGATTGGGGCACACAATTTGGTATGTTAATTGC 235262 >seq1429 Length=2652 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || ||||| || || || ||||| || || || ||||| || || || || ||||||||| Sbjct 798 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 739 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| ||||| || || || || || || || ||||| || || || || ||||| Sbjct 738 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 679 Query 550517 CTTGCATATGGACTTGATAA 550536 || || ||||| || || || Sbjct 678 CTGGCCTATGGCCTGGACAA 659 >seq1427 Length=2652 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || ||||| || || || ||||| || || || ||||| || || || || ||||||||| Sbjct 798 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 739 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| ||||| || || || || || || || ||||| || || || || ||||| Sbjct 738 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 679 Query 550517 CTTGCATATGGACTTGATAA 550536 || || ||||| || || || Sbjct 678 CTGGCCTATGGCCTGGACAA 659 >seq36 Length=774725 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || ||||| || || || ||||| || || || ||||| || || || || ||||||||| Sbjct 639229 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 639170 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| ||||| || || || || || || || ||||| || || || || ||||| Sbjct 639169 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 639110 Query 550517 CTTGCATATGGACTTGATAA 550536 || || ||||| || || || Sbjct 639109 CTGGCCTATGGCCTGGACAA 639090 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || ||||| || || || ||||| || || || ||||| || || || || ||||||||| Sbjct 641538 GACGCAGTCATCACAGTGCCAGCGTACTTCAACGACTCCCAGCGCCAGGCCACTAAAGAT 641597 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||||| ||||| || || || || || || || ||||| || || || || ||||| Sbjct 641598 GCTGGAGCCATTGCCGGCCTCAACGTGCTGCGCATCATCAACGAGCCAACGGCGGCTGCT 641657 Query 550517 CTTGCATATGGACTTGATAA 550536 || || ||||| || || || Sbjct 641658 CTGGCCTATGGCCTGGACAA 641677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029193668473150