Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq39 93.3 1e-14 seq26 93.3 1e-14 >seq39 Length=736423 Score = 93.3 bits (102), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||| ||||||||||| |||||| || ||||||||||| |||||||||||| Sbjct 89891 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 89832 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 89831 AACTGAGCTAA 89821 >seq26 Length=998041 Score = 93.3 bits (102), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||| ||||||||||| |||||| || ||||||||||| |||||||||||| Sbjct 454424 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 454365 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 454364 AACTGAGCTAA 454354 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 28045 CATGATCTTCGCCGCACAGCCAGCACGCTGTTGCATGAGGCTGGTTATCCATCTGACTGG 28104 |||||| | ||| | || || ||||| ||| |||| ||||| |||||| |||| ||| Sbjct 160651 CATGATTTGCGCAGGACGGCAAGCACTCTGCTGCACGAGGCAGGTTATAATACTGATTGG 160710 Query 28105 ATAGAAAAGGCGCTGGCGCATGAGCAAAAGGGAGTGCGTGCGGTATACAACAAAGCGGAG 28164 || || ||| || || |||||||| || || || | || || || || || || || Sbjct 160711 ATCGAGAAGTGCCTTGCCCATGAGCAGAAAGGTGTAAGAGCTGTTTATAATAAGGCCGAA 160770 Query 28165 TATGCGCGGC-AGCGCGCCTACATGTTGCAGCAGTGGGCTGATATGGTTGA 28214 ||| || | | ||||| || ||| | || | |||||||||||| |||| Sbjct 160771 TAT-CGTGACCAGCGCACCGCTATGCTTCAAGACTGGGCTGATATGATTGA 160820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123664358359620