Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq162 176 4e-39 seq3 84.2 2e-11 >seq162 Length=246154 Score = 176 bits (194), Expect = 4e-39 Identities = 451/676 (67%), Gaps = 18/676 (3%) Strand=Plus/Minus Query 29724 AAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29783 ||| || || | |||||| ||| | | || || |||| | ||||| |||| |||| Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208 Query 29784 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 29843 | || ||||| ||| || || || || || | || || || |||| ||| |||| Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 29844 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29902 |||||||||||| || |||| ||| |||||| | || || || ||||||| ||||| | Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089 Query 29903 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA 29962 | | ||| ||||||||| ||||| || || || |||||||| | || ||| || | Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029 Query 29963 GCTGACACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGTGTGGCAC 30015 |||| || ||||||||||| ||| ||||| || || | | |||||| Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTGTGCAAGGCAGTGGCAG 67970 Query 30016 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 30075 || || | ||||| | ||| ||| ||||||||| ||| |||||||| | Sbjct 67969 GGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACGA 67910 Query 30076 TCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATCC 30133 || ||| || | |||||| ||||| | | | ||| ||| || | ||| | | Sbjct 67909 TCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTGC 67852 Query 30134 CCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCG 30192 | |||||| | | || || | ||||| || || || || | |||||| || || Sbjct 67851 CGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAAGTGTCGCCACTGAAAGCCA 67793 Query 30193 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30252 || || || ||||| |||||| | | | || | | |||| |||||| | ||| ||| Sbjct 67792 TAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTCT 67733 Query 30253 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCGGAGAGCTCTTTGGAGTTTGT 30311 |||| | |||| | ||||| || | || |||| | | || ||| | | | ||| Sbjct 67732 CTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTGT 67674 Query 30312 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGT 30371 || || ||||| ||||||||||||||||| ||| | || |||| |||||| Sbjct 67673 CTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGT 67614 Query 30372 CGTGAGGAGGGGAAAC 30387 || || ||||||||| Sbjct 67613 GGTCAGCAGGGGAAAC 67598 >seq3 Length=3134003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/151 (75%), Gaps = 10/151 (7%) Strand=Plus/Plus Query 52047 CCAGAGATGGGCGACAAGTTTGCGTC-GTTCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52105 ||| |||| |||||||||||||| || |||||| ||| ||||| |||||||| | | Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806 Query 52106 CCTG-ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 52161 || | | | |||||||| ||||||||| ||| | || || ||| ||||| |||||| Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865 Query 52162 TCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 |||| ||||| ||| | || || | ||||| Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408607963647755