Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq162 176 4e-39
seq3 84.2 2e-11
>seq162
Length=246154
Score = 176 bits (194), Expect = 4e-39
Identities = 451/676 (67%), Gaps = 18/676 (3%)
Strand=Plus/Minus
Query 29724 AAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29783
||| || || | |||||| ||| | | || || |||| | ||||| |||| ||||
Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208
Query 29784 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 29843
| || ||||| ||| || || || || || | || || || |||| ||| ||||
Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148
Query 29844 GGTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29902
|||||||||||| || |||| ||| |||||| | || || || ||||||| ||||| |
Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089
Query 29903 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA 29962
| | ||| ||||||||| ||||| || || || |||||||| | || ||| || |
Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029
Query 29963 GCTGACACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGTGTGGCAC 30015
|||| || ||||||||||| ||| ||||| || || | | ||||||
Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTGTGCAAGGCAGTGGCAG 67970
Query 30016 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 30075
|| || | ||||| | ||| ||| ||||||||| ||| |||||||| |
Sbjct 67969 GGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACGA 67910
Query 30076 TCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATCC 30133
|| ||| || | |||||| ||||| | | | ||| ||| || | ||| | |
Sbjct 67909 TCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTGC 67852
Query 30134 CCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCG 30192
| |||||| | | || || | ||||| || || || || | |||||| || ||
Sbjct 67851 CGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAAGTGTCGCCACTGAAAGCCA 67793
Query 30193 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 30252
|| || || ||||| |||||| | | | || | | |||| |||||| | ||| |||
Sbjct 67792 TAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTCT 67733
Query 30253 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCGGAGAGCTCTTTGGAGTTTGT 30311
|||| | |||| | ||||| || | || |||| | | || ||| | | | |||
Sbjct 67732 CTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTGT 67674
Query 30312 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGT 30371
|| || ||||| ||||||||||||||||| ||| | || |||| ||||||
Sbjct 67673 CTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGT 67614
Query 30372 CGTGAGGAGGGGAAAC 30387
|| || |||||||||
Sbjct 67613 GGTCAGCAGGGGAAAC 67598
>seq3
Length=3134003
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/151 (75%), Gaps = 10/151 (7%)
Strand=Plus/Plus
Query 52047 CCAGAGATGGGCGACAAGTTTGCGTC-GTTCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52105
||| |||| |||||||||||||| || |||||| ||| ||||| |||||||| | |
Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806
Query 52106 CCTG-ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 52161
|| | | | |||||||| ||||||||| ||| | || || ||| ||||| ||||||
Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865
Query 52162 TCAACCCCCACGCCTTTCCATCCAGGATGAC 52192
|||| ||||| ||| | || || | |||||
Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408607963647755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |