Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq234 141 7e-29
seq252 100 2e-16
seq35 95.1 1e-14
seq23 93.3 3e-14
>seq234
Length=227530
Score = 141 bits (156), Expect = 7e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | ||| || || || || || || ||||| | | |||| | |||| |||
Sbjct 9927 ACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCATCTTCC 9986
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
||||| || || || || ||||| || |||||||| || ||||| |||||||| || |||
Sbjct 9987 AATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 10046
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || ||| ||| |||| | || || |||| ||| || |||||||| | || |||
Sbjct 10047 ATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATGGTCTTG 10106
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473
|| || | || |||||||| ||||||||||||
Sbjct 10107 CCCGTAAGGGTCTTTACAAAGATCTGCATGGTT 10139
>seq252
Length=176535
Score = 100 bits (110), Expect = 2e-16
Identities = 172/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 13654 GAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTC 13713
||| || || || || |||| | | ||||||| || || || ||| | || | |||||
Sbjct 30047 GAACTTGCGCTTGCATCCTTGATAGTTCATGTAGCGAATCTTTCCAAATATCGCACGCTC 29988
Query 13714 CATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGG 13773
| ||||| | ||||| | || | || ||||||||||| || |||| ||||||||
Sbjct 29987 CTTCCAGCCCATGTCGTGTATGCCCCCAATGGACCACATGCAGCCCACATAGCCGTTGGG 29928
Query 13774 ATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACTGT 13833
|||||| || || | |||||| |||||||||| || | || | | ||| ||||
Sbjct 29927 ATCGCGCCCGTCTAGACTGTACTTGTCGTTGAGCAGAATCGAGT--ACTCGAGCGCCTGT 29870
Query 13834 --AGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891
|||| | ||| || | ||| || || ||||| || || | || | ||||||||
Sbjct 29869 TCCGGCGTGGCCGTCCACTCGAGTATCTTCTTGGCCCAGTACATGCGCAGAAATCCGTGC 29810
Query 13892 ATTTTGCC 13899
|| |||||
Sbjct 29809 ATCTTGCC 29802
>seq35
Length=832945
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| || || ||||| | || || || || || || ||||| |||| | ||| | |
Sbjct 773434 ACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 773493
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| |||| ||||| || ||||| ||||||||||| ||||| || |||||||| || ||
Sbjct 773494 GTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 773553
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| || || || || ||| | || | ||||| || | || || || | ||||
Sbjct 773554 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGAT 773613
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| || | || || || || |||||||||
Sbjct 773614 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || || || || || || ||||| |||| | ||| | | || |||
Sbjct 773669 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 773728
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || |||||||| || || || ||
Sbjct 773729 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 773788
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| || | || || || || |||| || |||
Sbjct 773789 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 773848
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | || || || || |||||||||
Sbjct 773849 CCAGTCAGGGTCTTCACGAAGATCTGCATG 773878
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || || || || || || ||||| |||| | ||| | | || |||
Sbjct 773897 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 773956
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || |||||||| || || || ||
Sbjct 773957 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 774016
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| || | || || || || |||| || |||
Sbjct 774017 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTG 774076
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | || || || || |||||||||
Sbjct 774077 CCAGTCAGGGTCTTCACGAAGATCTGCATG 774106
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| | || || || || || || ||||| |||| | ||| | | || |||
Sbjct 774125 ACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCC 774184
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || |||||||| || || || ||
Sbjct 774185 AGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 774244
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| || | || || || || || | || |||
Sbjct 774245 ATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTG 774304
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | || || || || |||||||||
Sbjct 774305 CCAGTCAGGGTCTTCACGAAGATCTGCATG 774334
>seq23
Length=1278451
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || ||||| || || || || ||||| || | | ||| | | |||| |||
Sbjct 1263197 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263256
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || || || || || ||
Sbjct 1263257 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263316
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | || || || || |||| ||||||
Sbjct 1263317 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263376
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || ||||| ||||||||
Sbjct 1263377 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || || || || ||||| || | | ||| | | |||| |||
Sbjct 1263425 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263484
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || || || || || ||
Sbjct 1263485 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263544
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | || || || || |||| ||||||
Sbjct 1263545 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263604
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || ||||| ||||||||
Sbjct 1263605 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || || || || ||||| || | | ||| | | |||| |||
Sbjct 1263653 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263712
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || || || || || ||
Sbjct 1263713 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1263772
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | || || || || |||| ||||||
Sbjct 1263773 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1263832
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || ||||| ||||||||
Sbjct 1263833 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || || || || || ||||| || | | ||| | | |||| |||
Sbjct 1263881 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCC 1263940
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || || | |||||| || || || || || || || || || ||
Sbjct 1263941 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 1264000
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| || | || || || || |||| ||||||
Sbjct 1264001 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTG 1264060
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || ||||| ||||||||
Sbjct 1264061 CCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396269054640795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |