Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq23 109 4e-19
seq6 105 5e-18
seq234 104 2e-17
seq35 102 6e-17
>seq23
Length=1278451
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | ||
Sbjct 1264100 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1264159
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 1264160 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1264219
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 1264220 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTG 1264279
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 1264280 ATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | ||
Sbjct 1263416 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263475
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 1263476 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263535
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 1263536 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263595
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| ||| || ||||| ||||||||
Sbjct 1263596 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | ||
Sbjct 1263644 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263703
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 1263704 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263763
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 1263764 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263823
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| ||| || ||||| ||||||||
Sbjct 1263824 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | ||
Sbjct 1263872 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263931
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 1263932 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263991
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 1263992 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1264051
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| ||| || ||||| ||||||||
Sbjct 1264052 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||||||| || || ||| || || || ||||| ||||| ||| | ||
Sbjct 1263188 AGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263247
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 1263248 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263307
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 1263308 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263367
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||| ||| || ||||| ||||||||
Sbjct 1263368 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
>seq6
Length=3104374
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || || ||| || || || ||||| || || ||| | ||
Sbjct 2898471 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 2898412
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| |||||||
Sbjct 2898411 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 2898352
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||||| ||
Sbjct 2898351 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 2898292
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | |||||| |||||||| |||||
Sbjct 2898291 ATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
>seq234
Length=227530
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | ||||||| |||||||| | ||| ||| || ||||| || |||||||
Sbjct 9907 CGCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG 9966
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|||| |||| | || ||||| || || || || || |||| || |||||||| | |
Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || || ||||| |||||| ||| ||| | | | || |||| || |
Sbjct 10027 GAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGA 10086
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|||| | || || || || ||||| | || |||||||| |||||||| ||
Sbjct 10087 CCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGT 10138
>seq35
Length=832945
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || ||||| |||||||| | || ||| || || || ||||| || |
Sbjct 773421 CGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 773480
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | | | || |||| |||| |||||| |||||||| |||| ||||| ||||| | ||
Sbjct 773481 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 773540
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| |||||||||||| ||||| || ||| | | | || || | ||| |
Sbjct 773541 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 773600
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| || || || || || |||| || || || || ||||||||
Sbjct 773601 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| | || ||| || || || ||||| || || | | | ||
Sbjct 773660 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 773719
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||||
Sbjct 773720 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 773779
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 773780 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 773839
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| || || || || ||||||||
Sbjct 773840 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| | || ||| || || || ||||| || || | | | ||
Sbjct 773888 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 773947
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||||
Sbjct 773948 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 774007
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 774008 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 774067
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| || || || || ||||||||
Sbjct 774068 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| | || ||| || || || ||||| || || | | | ||
Sbjct 774116 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 774175
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||||
Sbjct 774176 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 774235
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 774236 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTT 774295
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| || || || || ||||||||
Sbjct 774296 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380928616420005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |