Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq23 109 4e-19 seq6 105 5e-18 seq234 104 2e-17 seq35 102 6e-17 >seq23 Length=1278451 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | || Sbjct 1264100 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1264159 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 1264160 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1264219 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 1264220 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTG 1264279 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| ||||| ||||| |||||||| Sbjct 1264280 ATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | || Sbjct 1263416 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263475 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 1263476 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263535 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 1263536 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263595 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||| || ||||| |||||||| Sbjct 1263596 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | || Sbjct 1263644 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263703 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 1263704 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263763 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 1263764 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263823 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||| || ||||| |||||||| Sbjct 1263824 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || ||| ||| || || || ||||| ||||| ||| | || Sbjct 1263872 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263931 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 1263932 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263991 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 1263992 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1264051 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||| || ||||| |||||||| Sbjct 1264052 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| || || ||| || || || ||||| ||||| ||| | || Sbjct 1263188 AGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263247 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 1263248 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263307 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 1263308 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTG 1263367 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||| || ||||| |||||||| Sbjct 1263368 ATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 >seq6 Length=3104374 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || ||| | || Sbjct 2898471 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 2898412 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 2898411 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 2898352 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 2898351 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 2898292 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||| |||||||| ||||| Sbjct 2898291 ATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 >seq234 Length=227530 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||||||| |||||||| | ||| ||| || ||||| || ||||||| Sbjct 9907 CGCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG 9966 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 |||| |||| | || ||||| || || || || || |||| || |||||||| | | Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || || ||||| |||||| ||| ||| | | | || |||| || | Sbjct 10027 GAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGA 10086 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || || || || ||||| | || |||||||| |||||||| || Sbjct 10087 CCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATGGT 10138 >seq35 Length=832945 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || ||||| |||||||| | || ||| || || || ||||| || | Sbjct 773421 CGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 773480 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || |||| |||| |||||| |||||||| |||| ||||| ||||| | || Sbjct 773481 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 773540 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || ||| | | | || || | ||| | Sbjct 773541 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 773600 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || || |||| || || || || |||||||| Sbjct 773601 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || || ||||| || || | | | || Sbjct 773660 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 773719 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 773720 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 773779 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 773780 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 773839 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 773840 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || || ||||| || || | | | || Sbjct 773888 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 773947 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 773948 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 774007 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 774008 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTG 774067 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 774068 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | || ||| || || || ||||| || || | | | || Sbjct 774116 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 774175 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||| Sbjct 774176 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 774235 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 774236 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTT 774295 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 774296 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928616420005