Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq26 95.1 3e-15 seq39 84.2 6e-12 >seq26 Length=998041 Score = 95.1 bits (104), Expect = 3e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1194 CATGATATGCGCCGTACAGCCAGTACGTTGTTGCATGAGGCTGGTTATCCTTCAGACTGG 1253 |||||| ||||| | || || || || || |||| ||||| |||||| | | || ||| Sbjct 160651 CATGATTTGCGCAGGACGGCAAGCACTCTGCTGCACGAGGCAGGTTATAATACTGATTGG 160710 Query 1254 ATTGAAAAGGCTCTGGCACATGAGCAGAAAGGTGTGCGCGCCGTATATAACAAAGCGGAA 1313 || || ||| || || ||||||||||||||||| | || || ||||| || || ||| Sbjct 160711 ATCGAGAAGTGCCTTGCCCATGAGCAGAAAGGTGTAAGAGCTGTTTATAATAAGGCCGAA 160770 Query 1314 TA-CGCCAGACAGCGCGCCTACATGTTGCAGCAGTGGGCCGATATGATTGA 1363 || || | |||||| || ||| | || | ||||| ||||||||||| Sbjct 160771 TATCGTGA-CCAGCGCACCGCTATGCTTCAAGACTGGGCTGATATGATTGA 160820 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479 ||||| | | ||| ||||||||||| ||| || || ||||||||||| |||||||| ||| Sbjct 454424 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 454365 Query 14480 AACTGAGCTAA 14490 ||||||||||| Sbjct 454364 AACTGAGCTAA 454354 >seq39 Length=736423 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 14420 TGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCC 14479 ||||| | | ||| ||||||||||| ||| || || ||||||||||| |||||||| ||| Sbjct 89891 TGGCGCGCCCTGCTGGATTCGAACCAGCGGCCCACAGCTTAGAAGGCTGTTGCTCTATCC 89832 Query 14480 AACTGAGCTAA 14490 ||||||||||| Sbjct 89831 AACTGAGCTAA 89821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143183909826620