Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq111 217 3e-51 >seq111 Length=362587 Score = 217 bits (240), Expect = 3e-51 Identities = 556/830 (67%), Gaps = 25/830 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || | |||||||||||||||||||| || |||| ||||| | || Sbjct 244371 CTGGTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATC 244430 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 |||||| |||||| || ||||| || | | || || | || |||||| Sbjct 244431 CATGAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAG 244490 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| ||||| | || ||||| | ||||||||| | ||||||||| || | Sbjct 244491 ACGATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATT 244550 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| || | ||||| ||||| | ||| || | || || |||| | |||| Sbjct 244551 GCAGGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTC 244610 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG-CATAGAGCATGCAGGCA 48136 ||| ||| | ||| | ||| | || |||| | ||| ||||| ||| Sbjct 244611 AATAATGCGCTCCCGCTTGGGAC-GCTGCACCAGATGCTGGTACAT-GAGCACC---GCA 244665 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | |||||||| || ||| ||| ||||||||||| ||||| ||| Sbjct 244666 AAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGC 244725 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || || ||||| || || | || || ||| ||||||||| || Sbjct 244726 ATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCT 244785 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTGTCTGAGATCC 48314 ||||| || || || || | | | ||| | |||| | || | | | || |||| Sbjct 244786 TCCACGGCTGCAAAGGCAATAATACGCTCGGC-AAAGTTGGCCGATTTCGAG-GATATCC 244843 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| || |||||||||||||| ||| | ||||| ||||| | || ||| | Sbjct 244844 AGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAACA 244903 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCA-GCTTTGCGTACA 48428 | | || ||| || || ||| | ||||| | |||||| ||| ||||| Sbjct 244904 AGTAGTCGCGCTC--CTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCT----GTACA 244957 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| |||||||| ||||| || || |||||||| ||||||||| | ||||| | Sbjct 244958 TCTCGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGA 245017 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||||| || ||| | ||| | ||||||||| || || || ||||| || |||| Sbjct 245018 TCTGCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAG 245077 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 | |||||||| || || || | ||| | ||||||||||| ||| ||| |||| Sbjct 245078 CGAAGAAGGCCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGACGGGCCCAG- 245136 Query 48609 CCTGT-ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| |||| || || ||||| |||||||||||||||||||| || Sbjct 245137 TCTGTCGCGTCCTTCGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGC 245186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510268550400