Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq111 217 3e-51
>seq111
Length=362587
Score = 217 bits (240), Expect = 3e-51
Identities = 556/830 (67%), Gaps = 25/830 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || | || | |||||||||||||||||||| || |||| ||||| | ||
Sbjct 244371 CTGGTACTCGGCAACCTTTTTCTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATC 244430
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
|||||| |||||| || ||||| || | | || || | || ||||||
Sbjct 244431 CATGAAACTGAAGGGATTCTTAGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAG 244490
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
|||| ||||| | || ||||| | ||||||||| | ||||||||| || |
Sbjct 244491 ACGATCGGCGACAAATTCAATGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATT 244550
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||| || | ||||| ||||| | ||| || | || || |||| | ||||
Sbjct 244551 GCAGGGCAGGGCTTCGGTGAGGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCTC 244610
Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGG-CATAGAGCATGCAGGCA 48136
||| ||| | ||| | ||| | || |||| | ||| ||||| |||
Sbjct 244611 AATAATGCGCTCCCGCTTGGGAC-GCTGCACCAGATGCTGGTACAT-GAGCACC---GCA 244665
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||| | |||||||| || ||| ||| ||||||||||| ||||| |||
Sbjct 244666 AAGTCGCAGTGGAGACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGC 244725
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| || | || || ||||| || || | || || ||| ||||||||| ||
Sbjct 244726 ATGAGGCCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCT 244785
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG--CGTTCTTGTCTGAGATCC 48314
||||| || || || || | | | ||| | |||| | || | | | || ||||
Sbjct 244786 TCCACGGCTGCAAAGGCAATAATACGCTCGGC-AAAGTTGGCCGATTTCGAG-GATATCC 244843
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
|||| || |||||||||||||| ||| | ||||| ||||| | || ||| |
Sbjct 244844 AGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAACA 244903
Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGT---AGTGAGCA-GCTTTGCGTACA 48428
| | || ||| || || ||| | ||||| | |||||| ||| |||||
Sbjct 244904 AGTAGTCGCGCTC--CTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCT----GTACA 244957
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| |||||||| ||||| || || |||||||| ||||||||| | ||||| |
Sbjct 244958 TCTCGGAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGA 245017
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
|||||| || ||| | ||| | ||||||||| || || || ||||| || ||||
Sbjct 245018 TCTGCACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAG 245077
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608
| |||||||| || || || | ||| | ||||||||||| ||| ||| ||||
Sbjct 245078 CGAAGAAGGCCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGACGGGCCCAG- 245136
Query 48609 CCTGT-ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|||| |||| || || ||||| |||||||||||||||||||| ||
Sbjct 245137 TCTGTCGCGTCCTTCGATAGATCCACCTCTTCCACAGTCCAGAAGGAGGC 245186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931510268550400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |