Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq111 159 6e-34 >seq111 Length=362587 Score = 159 bits (176), Expect = 6e-34 Identities = 353/522 (68%), Gaps = 12/522 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||| | |||||| | ||||| | |||||| | | |||| | ||| || | Sbjct 245178 CTGGACTGTGGAAGAGGTGGATCTATCGAAGGACGCGACAGACTGGGCCCGTCTGACCGA 245119 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 |||||| | || || ||||| |||| ||||| || ||||| ||||| || || Sbjct 245118 CAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTTCGCTGCCTCCGATGGCATTGT 245059 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||||||| |||| | |||| ||| |||||| | |||||| || || Sbjct 245058 TAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCGCGTTGCTT 244999 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| |||||||| ||||| || || |||||||| ||| |||| | ||| | | Sbjct 244998 CTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGATGTACAGCGTGCTCAT--T 244941 Query 25752 GACGTACATTACAGAC-GTCGCCGAGAGAGATCGGC----TGTTTGGTGCCATCGAGCAC 25806 ||| || |||| || | ||||| ||| || | |||| ||| | ||| | Sbjct 244940 GAC--AC-CTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCAATGCTGTTGAGACC 244884 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GC 25865 || || | ||| | ||||| |||||| || ||||| | | | | | | || Sbjct 244883 ATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGAT-ATCCTCGAAATCGGC 244825 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | |||| |||||| | | |||||||| || ||||| || ||||| |||||||| Sbjct 244824 CAACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAG 244765 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 ||||| | ||||| ||||| ||| || || ||||||||| ||| ||| ||||| Sbjct 244764 CTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAA 244705 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 |||||| ||| | ||||| ||||||||| | || ||||| Sbjct 244704 CGAGCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGC 244663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822333566400