Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_019933.2 Length=43870 Score E Sequences producing significant alignments: (Bits) Value seq22 87.8 5e-13 >seq22 Length=1073832 Score = 87.8 bits (96), Expect = 5e-13 Identities = 249/375 (66%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 6546 GACCGCCTGCGTCTGGCTCTGTTGCAGGC-ACAGCTGGCCGAGTTCCCGGCTACCGGTAT 6604 ||||| |||||||| || || ||||| | ||| |||| || | || || || ||| Sbjct 653778 GACCGACTGCGTCTCGCCATGATGCAGACCACAT-TGGCGGAATATCCAGCGACAGGTCA 653836 Query 6605 TGTCCTTAACCCGGCAGATTGGGCCGGCATTGAACTCCTGAAGGACACTCAGGGCCGCTA 6664 | || || ||| | || |||||| | || ||||| || || | ||| ||||| Sbjct 653837 CATTCTAAAACCGACCGACTGGGCCAGTATCGAACTGACTAAAGATAGACAGCTTCGCTA 653896 Query 6665 CATCCTGGGTAATCCGCA-GGGCACCCTGGCCCCAACTCTGTGGGGTCTGCCGGTTGTTG 6723 ||| | | |||||||| |||| |||| || || || ||||| |||| || | | Sbjct 653897 CATTTTTGCTAATCCGCTTGGGCTGACTGGACCAAAA-CTCTGGGGGATGCCTGTCGCAG 653955 Query 6724 CAACTCAGGCGATGGCTGTGGGCCAGTTCCTGACCGGTGCCTTTGATGCCGGT-GCACAG 6782 || | || |||||| |||| | || |||| || || ||| | | || || ||| Sbjct 653956 AAAGCCTTGCCATGGCTCAGGGCAAATTAATGACGGGCGC-TTTCAGTCTGGCCGCGCAG 654014 Query 6783 GTCTTTGATCGCTGGGCCGCCCGCGTTGAGGTTGCCACCGAGAATCAGGATGACTTCATC 6842 | ||||| || || || || || | || || | | ||| ||||| || Sbjct 654015 ATTTTTGACCGTGAGGATGCGACTGTCAGCATTTCGACAGAAGACCGGGAAAACTTCGTC 654074 Query 6843 AAGAACATGGTCACCATCCTGGCCGAAGAGCGCTTGGCTCTGGCGGTCTATCGTCCGGAG 6902 ||||| ||||||||||| ||||| || || || |||||||||| ||||| || || || Sbjct 654075 AAGAAAATGGTCACCATTCTGGCAGAGGAACGTCTGGCTCTGGCCGTCTACCGCCCTGAA 654134 Query 6903 TCCTTCATCAAGGGT 6917 | | ||||| ||| Sbjct 654135 GCGCTGATCAATGGT 654149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140259177033040