Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14 176 3e-38 seq234 114 8e-20 seq224 111 1e-18 seq8 111 1e-18 seq131 104 2e-16 seq139 91.5 1e-12 >seq14 Length=1523015 Score = 176 bits (194), Expect = 3e-38 Identities = 373/548 (68%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | || |||| || || | Sbjct 1236652 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTCG 1236593 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 1236592 AGATCATTGCCAACGACCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACGGACA 1236533 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| ||||| || || | || | || || || | | || | Sbjct 1236532 CGGAGCGTTTGATTGGTGATGCCGCCAAGAACCAGGTGGCGATGAACCCAACTCAAACGA 1236473 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | |||| ||||| || ||||| ||| | |||| || ||||| | Sbjct 1236472 TCTTCGATGCCAAGCGTCTGATCGGTCGCAAGTTTGAGGATTCTGCTGTGCAGTCTGACA 1236413 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || | ||| | | ||| | ||| || || | || || | | | Sbjct 1236412 TGAAGCACTGGCCCTTCGACGTGGTCAGTGTAGATGGCAAGCCCAAGATTGAGGTTACGT 1236353 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 1236352 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 1236295 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 |||||| | |||| |||| | || | ||| ||||| || || |||| || || ||| Sbjct 1236294 AATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACGGTGACCAATGCCGTCATCACT 1236237 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || || || || || ||||| || || || || || || | ||||| Sbjct 1236236 GTGCCAGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGACGCCGGTACCATTGCC 1236177 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| | ||||| || || || || || || || || | || ||||| || Sbjct 1236176 GGATTGAATGTGCTGCGTATCATCAACGAGCCGACGGCCGCTGCTATCGCCTATGGCCTG 1236117 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1236116 GACAAGAA 1236109 >seq234 Length=227530 Score = 114 bits (126), Expect = 8e-20 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| || ||||| | ||| | ||| ||| ||| ||| |||||||||| ||| Sbjct 9914 ACGAAGCCGCAGTACCAAATGCAAGGTGGACTC-CTTCTGAATG-TTATAATCAGATAGT 9971 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||| | |||||| | ||| || ||||| || || | ||||||||||| ||||||||| Sbjct 9972 GTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATT 10031 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| |||||||| ||||||| ||| || ||||| | || ||| Sbjct 10032 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCA 10091 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || ||||| || || || || Sbjct 10092 AGAGTTATGGTCTTGCCCGTAAGGGTCTTTACAAAGATCTG 10132 >seq224 Length=190040 Score = 111 bits (122), Expect = 1e-18 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||||| | || ||||| |||| || ||| | || ||||| || |||| || | || Sbjct 57840 GTTTTGGGTAAGATGAAGGAAACTGCCGAGG-CTTACCTTGGTGAAAAAGTGACGCAGGC 57782 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || ||||||||||| || || ||||| ||| | || ||||| ||||| || ||||| || Sbjct 57781 CGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGG 57722 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| || ||| | || | ||||| ||||| |||||||| || || || ||||| Sbjct 57721 TCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGC 57662 Query 474859 TTATGGTCTTGATAAGAA 474876 ||||| | || ||||| Sbjct 57661 CTATGGCATGGAAAAGAA 57644 >seq8 Length=1553183 Score = 111 bits (122), Expect = 1e-18 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||||| | || ||||| |||| || ||| | || ||||| || |||| || | || Sbjct 763546 GTTTTGGGTAAGATGAAGGAAACTGCCGAGG-CTTACCTTGGTGAAAAAGTGACGCAGGC 763488 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 || ||||||||||| || || ||||| ||| | || ||||| ||||| || ||||| || Sbjct 763487 CGTCATTACTGTTCCGGCTTACTTTAACGATGCCCAGCGTCAGGCAACCAAGGATGCCGG 763428 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | ||||| || ||| | || | ||||| ||||| |||||||| || || || ||||| Sbjct 763427 TCGTATTGCTGGCCTTGAAGTGCTGCGTATCATTAACGAACCAACCGCTGCTGCCCTTGC 763368 Query 474859 TTATGGTCTTGATAAGAA 474876 ||||| | || ||||| Sbjct 763367 CTATGGCATGGAAAAGAA 763350 >seq131 Length=332952 Score = 104 bits (114), Expect = 2e-16 Identities = 130/176 (74%), Gaps = 12/176 (7%) Strand=Plus/Minus Query 817092 TTTTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGAT 817151 |||| | ||||| || || || ||||| || ||| | |||||| |||| ||| | | | Sbjct 235430 TTTTGGTGGATTTCTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCACCTACGCT 235371 Query 817152 CTACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTG------GATGTGAAG 817205 |||| || ||||| ||||| |||| | | ||||||| || ||||||| Sbjct 235370 CTACCATTATTGGCGAATCAATTTGCCGCTTGCTAGAATTTT-TGAAGCACGATGTGA-- 235314 Query 817206 TACAAAGAATAAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 | | | ||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 235313 TTC---GTATAAATCATCTTGGTGATTGGGGCACACAATTTGGTATGTTAATTGCA 235261 >seq139 Length=282105 Score = 91.5 bits (100), Expect = 1e-12 Identities = 358/557 (64%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || || || || || || ||| || || | ||| | || | || || Sbjct 280275 GCTATTGGAATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTACCAGCACGGAAAG 280216 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || || || ||||| | || || Sbjct 280215 GTGGAGATTATCGCCAATGACCAGGGAAACCGGACGACGCCCAGCTATGTGGCATTCACA 280156 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| ||||| || || || || | || | ||| || || | || Sbjct 280155 GAGTCGGAGCGTCTGATTGGCGACGCCGCCAAGAACCAGGTGGCAATGAACCCGATGAAC 280096 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || |||| ||||| || | ||||||| || || | || ||| ||| | | Sbjct 280095 ACAGTTTTCGATGCCAAGCGCCTGATTGGGCGCAAGTACGACGATCCCAAGATTGCAGAG 280036 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || || || ||||| || |||||| ||| | ||| || || || | || | | Sbjct 280035 GACATCAAGCACTGGCCGTTCAAGGTGGTAAGCGATGGGGGCAAGCCCAAGATTGGCGTT 279976 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | | || | || ||| | || | ||||| ||||| | || || ||||| | | Sbjct 279975 GAGTTCAAG--GGCGAACCGAAGCGCTTTTCCCCGGAGGAGATCAGCTCGATGGTGCTGG 279918 Query 474687 CCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||||||||| | || | |||| | ||||| || || | || || ||||| || Sbjct 279917 TCAAAATGAAGGAGACGGCCGAG-GCTTATCTGGGCGAAAGCATCACAGACGCAGTCATC 279859 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || || || || || || || || || || ||||| || | || Sbjct 279858 ACAGTGCCTGCCTACTTCAACGACTCACAGCGCCAGGCCACGAAGGATGCTGGCCGCATC 279799 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||| || ||||| | | || | ||||| || || || ||||| || || ||||| Sbjct 279798 GCAGGCCTCAATGTGCTCAGAATCGTCAATGAGCCGACGGCGGCCGCGCTAGCCTATGGA 279739 Query 474866 CTTGATAAGAATTCTGA 474882 || || ||||| ||||| Sbjct 279738 CTGGACAAGAA-TCTGA 279723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268096198461380