Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq328 188 4e-43 >seq328 Length=165906 Score = 188 bits (208), Expect = 4e-43 Identities = 332/479 (69%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||| |||||||| | |||||||| | ||| | |||| |||||||||| Sbjct 106164 CATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTT 106105 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||||| || ||||| || ||||||| |||||| ||||| || ||||||| Sbjct 106104 TCCAGTGTTTCTTTTG-AGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAAT 106046 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| ||| ||||||||| || || ||||| || |||| ||| | || Sbjct 106045 AAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTAT 105986 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGG 26171 | || ||| | | |||||||||||||||| ||||| ||||| || | | || | Sbjct 105985 TAAATACTCTTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTCCACATATGGAAG 105926 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 ||| | | | |||| ||| ||| || || |||||||| || |||| ||||| Sbjct 105925 TGCCTTTGGCACGAATACAATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCA 105866 Query 26232 CTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATA 26291 |||||| | | ||||| | ||||| |||| || ||| |||||| || | Sbjct 105865 TTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAA 105806 Query 26292 AAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCAT 26351 |||||| || |||| ||| | || |||| | | | ||| | || || | |||| Sbjct 105805 GAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCAT 105746 Query 26352 GAGTATAATATCCTTCACTCAAAGCTG--TATAAGTTTCAAGAACTTCATCGATATTGT 26408 | ||| |||||| | || |||| | | |||||||||| | || || | |||| || Sbjct 105745 GCGTAAAATATC--GCTCTGAAAGTAGGTTGTAAGTTTCAACAGCTGCACCAATATCGT 105689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034032605125