Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq328 96.9 4e-15 >seq328 Length=165906 Score = 96.9 bits (106), Expect = 4e-15 Identities = 228/340 (67%), Gaps = 7/340 (2%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| | ||||| ||||||| |||||| | ||||| | ||||| || ||| | Sbjct 106342 GAAACTGGTAACCCATACATGCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAA 106401 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || || || || ||| | || || |||||| | |||||| | | Sbjct 106402 AATGTTGGCACTATTAAATGCAGTAATTTATGTACAGAAATTGTTGAGTACTCTGCACCT 106461 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||||| |||||||||||||| || ||||| || ||| | || ||| | ||| Sbjct 106462 GATGAGATCGCTGTTTGCAATTTAGCTTCAATTGCACTTAACATGTTTGTAACACCAGAA 106521 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || ||||||| ||||| | | || | || || | |||| | |||||||| Sbjct 106522 A---AAACATTTGATTTCAAAAAATTAAAAGATGTAACCAAAACTGTTGCTAAAAATCTT 106578 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATGC 76202 || | | || |||| || | ||| ||| ||| ||| || || || ||| | Sbjct 106579 AATAAAATAATAGACATCAACTATTA-CCCCTTGCCAGA-AGCTAAGAAATCCAATTTAA 106636 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | || | || |||||| | |||||||||||| |||| || Sbjct 106637 GGCATCGTCCAATTGGTATAGGTGTTCAAGGTTTCGCTGA 106676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555170472800