Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq22 165 3e-36 seq8 150 7e-32 >seq22 Length=1073832 Score = 165 bits (182), Expect = 3e-36 Identities = 411/611 (67%), Gaps = 25/611 (4%) Strand=Plus/Plus Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470 || ||||| | |||| ||| | ||||||||| || |||||| ||| ||||| Sbjct 575976 TCCGCATATGCCCGGATCTCGTACTGGGCATGCGGGTCAAGGCGCAGGGCCAGAAAGTGC 576035 Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530 | || ||||| || ||||||||||| ||||| ||||||||| ||| | | || || Sbjct 576036 ATCAGATTGTGCAGATCAATCTTCCAGTACCACTGGGTGTAGGTATTCAGGGTCAGATTG 576095 Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGT---CCT-GACCGTCATCGCTGATCATCTCTTC 44586 || ||||||||||| || |||| |||| ||| | |||| ||| | ||| ||| Sbjct 576096 ATACGGGCCAGTTCACGCGCCAGACCGTAGCCCTCGTCCGT-ATCC---AGCATGGTTTC 576151 Query 44587 ATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAG---GACCCGCTGAGC 44643 ||||| ||||| | | ||| || |||| | || || | | || | | Sbjct 576152 ATAGTTGCGATAGGTGCGCATGGCATC----ATCACGCAGAATATCCAGCACGGCGGCGG 576207 Query 44644 C-TCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CTGGGAT 44701 | || || || | || || || |||| ||||| | ||| | |||| ||||| Sbjct 576208 CATCTGCGCCTTCCAGCACGG---CACCGCGACCCTGACGGTTAAT-TTCGCTCTGGGCG 576263 Query 44702 GCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGGCTGAG 44761 || | || || || || | |||||||||| || |||||||||||||| || Sbjct 576264 GCCATATGTTCTGGCGCGGGCAGATAGAACTCACTGTCCAGAATCGAATAGCGGGCAGAA 576323 Query 44762 TATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGGGCAGT 44821 ||||| |||||| ||||| | || ||||| |||||||| | || | ||| | || ||| Sbjct 576324 TATTCGTTCACGCTGGCCATGCGATGACGAATCCATTGCCTAGCAATAAAAATCGGTAGT 576383 Query 44822 TTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCATAAGG 44881 ||||| |||| ||||||||| || |||||||| || || | ||| ||||| || Sbjct 576384 TTGACGTGAAATTTGATCTCGCACATTTCAAACGGCGAGGAATGGCGATGCCGCATCAGA 576443 Query 44882 TAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGATACGC 44939 ||||||| || ||| || ||| ||||||| | ||| || | || ||||| || | Sbjct 576444 TAGCGGA-TAAGTCCCGCATCTT-CTGACACTTTGCGGGTACCGCGCCCATAGGAAACAC 576501 Query 44940 GGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGACAAAGCCAT 44999 | ||| ||| || || ||| || ||||| |||||||| || | |||||| | Sbjct 576502 GCGCCGCCTGCACAATGGCGGAATCATCCCCCATATAGTCGATAACGCGCAGAAAGCCGT 576561 Query 45000 GATCTAGGACC 45010 | || || ||| Sbjct 576562 GGTCAAGCACC 576572 >seq8 Length=1553183 Score = 150 bits (166), Expect = 7e-32 Identities = 408/612 (67%), Gaps = 27/612 (4%) Strand=Plus/Minus Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470 || ||||| | |||| ||| | ||||||||| || |||||| ||| ||||| Sbjct 1365199 TCCGCATATGCCCGGATCTCGTACTGGGCATGCGGGTCCAGGCGCAGGGCCAGAAAGTGC 1365140 Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530 | || || ||||| ||||||||||| ||||| ||||||||| ||| | | || || Sbjct 1365139 ATCAGATTATGTAGATCAATCTTCCAGTACCACTGGGTGTAGGTATTCAGGGTCAGATTG 1365080 Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGT---CCT-GACCGTCATCGCTGATCATCTCTTC 44586 || ||||||||||| ||||||| |||| ||| | |||| ||| | ||| ||| Sbjct 1365079 ATACGGGCCAGTTCACGGGCCAGACCGTAGCCCTCGTCCGT-ATCC---AGCATGGTTTC 1365024 Query 44587 ATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAG----TGTAGGACCCGCTG-A 44641 ||||| ||||| | | ||| || |||| | || | ||| || || | | Sbjct 1365023 ATAGTTGCGATAGGTGCGCATGGCATC----ATCACGCAGAATATCTAGCACG-GCGGCA 1364969 Query 44642 GCCTCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CTGGGA 44700 || || || || | || || | || || ||||| | ||| | |||| ||||| Sbjct 1364968 GCGTCTGCGCCTTCCAGCACGGCACCA---CGACCCTGACGGTTAAT-TTCGCTCTGGGC 1364913 Query 44701 TGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGGCTGA 44760 || | | || || || | |||||||||| || |||||||||||||| || Sbjct 1364912 GGCCATGTGTTCTGGCGCGGGCAGATAGAACTCACTGTCCAGAATCGAATAGCGGGCAGA 1364853 Query 44761 GTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGGGCAG 44820 ||||| |||||| ||||| | || ||||| ||||| || || || | || | || || Sbjct 1364852 ATATTCGTTCACGCTGGCCATGCGATGACGAATCCACTGCCGAGCAATGAAAATCGGTAG 1364793 Query 44821 TTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCATAAG 44880 |||||| |||| ||||||||| || |||||||| || || | || ||||| || Sbjct 1364792 TTTGACGTGAAATTTGATCTCGCACATTTCAAACGGCGAGGAATGACGGTGCCGCATCAG 1364733 Query 44881 GTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGATACG 44938 |||||||| || | |||| |||| || | ||| || | || ||||| || Sbjct 1364732 ATAGCGGATAAGCCCCGCATCCT--CTGATACTTTGCGGGTACCGCGCCCATAGGAAACA 1364675 Query 44939 CGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGACAAAGCCA 44998 || ||| ||| || || ||| || ||||| |||||||| || | |||||| Sbjct 1364674 CGCGCCGCCTGCACAATGGCGGAATCATCCCCCATATAGTCGATAACGCGCAGAAAGCCG 1364615 Query 44999 TGATCTAGGACC 45010 || || || ||| Sbjct 1364614 TGGTCAAGCACC 1364603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182139814672400