Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_020853.1
Length=56958
Score E
Sequences producing significant alignments: (Bits) Value
seq22 165 3e-36
seq8 150 7e-32
>seq22
Length=1073832
Score = 165 bits (182), Expect = 3e-36
Identities = 411/611 (67%), Gaps = 25/611 (4%)
Strand=Plus/Plus
Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470
|| ||||| | |||| ||| | ||||||||| || |||||| ||| |||||
Sbjct 575976 TCCGCATATGCCCGGATCTCGTACTGGGCATGCGGGTCAAGGCGCAGGGCCAGAAAGTGC 576035
Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530
| || ||||| || ||||||||||| ||||| ||||||||| ||| | | || ||
Sbjct 576036 ATCAGATTGTGCAGATCAATCTTCCAGTACCACTGGGTGTAGGTATTCAGGGTCAGATTG 576095
Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGT---CCT-GACCGTCATCGCTGATCATCTCTTC 44586
|| ||||||||||| || |||| |||| ||| | |||| ||| | ||| |||
Sbjct 576096 ATACGGGCCAGTTCACGCGCCAGACCGTAGCCCTCGTCCGT-ATCC---AGCATGGTTTC 576151
Query 44587 ATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAG---GACCCGCTGAGC 44643
||||| ||||| | | ||| || |||| | || || | | || | |
Sbjct 576152 ATAGTTGCGATAGGTGCGCATGGCATC----ATCACGCAGAATATCCAGCACGGCGGCGG 576207
Query 44644 C-TCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CTGGGAT 44701
| || || || | || || || |||| ||||| | ||| | |||| |||||
Sbjct 576208 CATCTGCGCCTTCCAGCACGG---CACCGCGACCCTGACGGTTAAT-TTCGCTCTGGGCG 576263
Query 44702 GCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGGCTGAG 44761
|| | || || || || | |||||||||| || |||||||||||||| ||
Sbjct 576264 GCCATATGTTCTGGCGCGGGCAGATAGAACTCACTGTCCAGAATCGAATAGCGGGCAGAA 576323
Query 44762 TATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGGGCAGT 44821
||||| |||||| ||||| | || ||||| |||||||| | || | ||| | || |||
Sbjct 576324 TATTCGTTCACGCTGGCCATGCGATGACGAATCCATTGCCTAGCAATAAAAATCGGTAGT 576383
Query 44822 TTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCATAAGG 44881
||||| |||| ||||||||| || |||||||| || || | ||| ||||| ||
Sbjct 576384 TTGACGTGAAATTTGATCTCGCACATTTCAAACGGCGAGGAATGGCGATGCCGCATCAGA 576443
Query 44882 TAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGATACGC 44939
||||||| || ||| || ||| ||||||| | ||| || | || ||||| || |
Sbjct 576444 TAGCGGA-TAAGTCCCGCATCTT-CTGACACTTTGCGGGTACCGCGCCCATAGGAAACAC 576501
Query 44940 GGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGACAAAGCCAT 44999
| ||| ||| || || ||| || ||||| |||||||| || | |||||| |
Sbjct 576502 GCGCCGCCTGCACAATGGCGGAATCATCCCCCATATAGTCGATAACGCGCAGAAAGCCGT 576561
Query 45000 GATCTAGGACC 45010
| || || |||
Sbjct 576562 GGTCAAGCACC 576572
>seq8
Length=1553183
Score = 150 bits (166), Expect = 7e-32
Identities = 408/612 (67%), Gaps = 27/612 (4%)
Strand=Plus/Minus
Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470
|| ||||| | |||| ||| | ||||||||| || |||||| ||| |||||
Sbjct 1365199 TCCGCATATGCCCGGATCTCGTACTGGGCATGCGGGTCCAGGCGCAGGGCCAGAAAGTGC 1365140
Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530
| || || ||||| ||||||||||| ||||| ||||||||| ||| | | || ||
Sbjct 1365139 ATCAGATTATGTAGATCAATCTTCCAGTACCACTGGGTGTAGGTATTCAGGGTCAGATTG 1365080
Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGT---CCT-GACCGTCATCGCTGATCATCTCTTC 44586
|| ||||||||||| ||||||| |||| ||| | |||| ||| | ||| |||
Sbjct 1365079 ATACGGGCCAGTTCACGGGCCAGACCGTAGCCCTCGTCCGT-ATCC---AGCATGGTTTC 1365024
Query 44587 ATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAG----TGTAGGACCCGCTG-A 44641
||||| ||||| | | ||| || |||| | || | ||| || || | |
Sbjct 1365023 ATAGTTGCGATAGGTGCGCATGGCATC----ATCACGCAGAATATCTAGCACG-GCGGCA 1364969
Query 44642 GCCTCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CTGGGA 44700
|| || || || | || || | || || ||||| | ||| | |||| |||||
Sbjct 1364968 GCGTCTGCGCCTTCCAGCACGGCACCA---CGACCCTGACGGTTAAT-TTCGCTCTGGGC 1364913
Query 44701 TGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGGCTGA 44760
|| | | || || || | |||||||||| || |||||||||||||| ||
Sbjct 1364912 GGCCATGTGTTCTGGCGCGGGCAGATAGAACTCACTGTCCAGAATCGAATAGCGGGCAGA 1364853
Query 44761 GTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGGGCAG 44820
||||| |||||| ||||| | || ||||| ||||| || || || | || | || ||
Sbjct 1364852 ATATTCGTTCACGCTGGCCATGCGATGACGAATCCACTGCCGAGCAATGAAAATCGGTAG 1364793
Query 44821 TTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCATAAG 44880
|||||| |||| ||||||||| || |||||||| || || | || ||||| ||
Sbjct 1364792 TTTGACGTGAAATTTGATCTCGCACATTTCAAACGGCGAGGAATGACGGTGCCGCATCAG 1364733
Query 44881 GTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGATACG 44938
|||||||| || | |||| |||| || | ||| || | || ||||| ||
Sbjct 1364732 ATAGCGGATAAGCCCCGCATCCT--CTGATACTTTGCGGGTACCGCGCCCATAGGAAACA 1364675
Query 44939 CGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGACAAAGCCA 44998
|| ||| ||| || || ||| || ||||| |||||||| || | ||||||
Sbjct 1364674 CGCGCCGCCTGCACAATGGCGGAATCATCCCCCATATAGTCGATAACGCGCAGAAAGCCG 1364615
Query 44999 TGATCTAGGACC 45010
|| || || |||
Sbjct 1364614 TGGTCAAGCACC 1364603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 182139814672400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |