Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq22 212 3e-50 seq8 205 4e-48 >seq22 Length=1073832 Score = 212 bits (234), Expect = 3e-50 Identities = 470/701 (67%), Gaps = 13/701 (2%) Strand=Plus/Minus Query 65063 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65122 || || |||||||| || ||| | | || || ||| | || || || || | ||| Sbjct 841131 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCG 841072 Query 65123 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65182 | ||||| ||| | |||||||||||||| ||| ||| || || | || ||| || Sbjct 841071 CGTGGCCGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTG 841012 Query 65183 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65242 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 841011 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 840952 Query 65243 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65302 |||| ||||| | |||||||| ||| || || || | || ||||| || | Sbjct 840951 GCCCTTGACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 840892 Query 65303 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65362 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 840891 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 840834 Query 65363 CTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65420 || || || | || || || ||||||||| || || || ||||||||||| || | Sbjct 840833 CTATCGATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGG 840774 Query 65421 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65480 |||| || || ||||| || ||||| ||||| || || |||||| |||||| |||||| Sbjct 840773 GCGATATGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCA 840714 Query 65481 AGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCG 65540 |||| ||||| | | | || | ||||| ||| | ||| | |||||| | || Sbjct 840713 AGCTGACCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTC 840654 Query 65541 AGAAGATCGGCAACGTGGGCTACGGCCCGAA---CGAGACCACCACGGGCGGCAAGGCTT 65597 ||| || || |||| | ||| ||| || || ||||| ||||| || || Sbjct 840653 TGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCC 840600 Query 65598 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65657 ||| || || || || || || ||||| | || || |||| || ||||| | Sbjct 840599 TGAAATTTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGG 840540 Query 65658 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 65717 | || | || ||||||| ||||| || || || || ||||||||| ||||||||||| Sbjct 840539 ACGAAGTGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGT 840480 Query 65718 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65758 | | | | |||||| | || |||| || || || ||| Sbjct 840479 TCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 840439 >seq8 Length=1553183 Score = 205 bits (226), Expect = 4e-48 Identities = 469/705 (67%), Gaps = 21/705 (3%) Strand=Plus/Plus Query 65063 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65122 || || |||||||| || ||| | | || || ||| | || || || || ||| Sbjct 1134788 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTCTGCCG 1134847 Query 65123 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65182 | ||||| ||| | |||||||||||||| ||| ||||| || | || ||| || Sbjct 1134848 CGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCCCTG 1134907 Query 65183 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65242 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 1134908 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 1134967 Query 65243 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65302 | || ||||| | ||||| || ||| || || || | || ||||| || | Sbjct 1134968 GCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 1135027 Query 65303 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65362 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 1135028 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 1135085 Query 65363 CTGTCCATCG------TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 65416 |||||| | || || || |||||||||||| ||||| ||||||||||| Sbjct 1135086 ----CCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTT 1135141 Query 65417 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATG 65476 || ||||| || || ||||| || ||||| |||||||| || || ||| |||||| || Sbjct 1135142 GAGGGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTG 1135201 Query 65477 CGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 65536 |||||||| ||||| | | | || | ||||| ||| | ||| | |||||| | Sbjct 1135202 CGCAAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATT 1135261 Query 65537 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAA---CGAGACCACCACGGGCGGCAAG 65593 || ||| || || |||| | ||| ||| || || || || ||||| || Sbjct 1135262 CGTCTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAAC 1135315 Query 65594 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65653 || ||| ||| || || || || || ||||| | ||||| |||| || ||||| Sbjct 1135316 GCCCTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGAC 1135375 Query 65654 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 65713 || || | || || |||| ||||| || || || || ||||||||| |||||||| Sbjct 1135376 AAGGACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCG 1135435 Query 65714 CCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65758 ||| | | | | |||||| | || |||| || || || ||| Sbjct 1135436 CCGTTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 1135480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242224687525895