Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_021309.1
Length=74711
Score E
Sequences producing significant alignments: (Bits) Value
seq22 221 6e-53
seq8 214 9e-51
>seq22
Length=1073832
Score = 221 bits (244), Expect = 6e-53
Identities = 472/701 (67%), Gaps = 13/701 (2%)
Strand=Plus/Minus
Query 64750 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 64809
|| || |||||||| || ||| | | || || ||| | || || || || | |||
Sbjct 841131 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCG 841072
Query 64810 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 64869
| ||||| ||| | |||||||||||||| ||| ||| || || | || ||| ||
Sbjct 841071 CGTGGCCGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTG 841012
Query 64870 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 64929
|| || | || | || |||||| || |||| | |||| || || ||||| ||
Sbjct 841011 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 840952
Query 64930 TCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 64989
|||| ||||||| |||||||| ||| || || || | || ||||| || |
Sbjct 840951 GCCCTTGACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 840892
Query 64990 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65049
||||| || ||||||| ||||| ||||| |||| ||| || || |||||| |
Sbjct 840891 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGC--G 840834
Query 65050 CTGTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65107
|| || | | | || || || ||||||||| || || || ||||||||||| || |
Sbjct 840833 CTATCGATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGG 840774
Query 65108 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65167
|||| || || ||||| || ||||| ||||| || || |||||| |||||| ||||||
Sbjct 840773 GCGATATGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCA 840714
Query 65168 AGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCG 65227
|||| || || | | | || | ||||| ||| | ||| | |||||| | ||
Sbjct 840713 AGCTGACCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTC 840654
Query 65228 AGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGAAAGGCTT 65284
||| || || |||| | ||| |||| || || ||||| ||||| || ||
Sbjct 840653 TGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCC 840600
Query 65285 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65344
||| || || || || || || ||||| | || || |||| || ||||| |
Sbjct 840599 TGAAATTTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGG 840540
Query 65345 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGC 65404
| || | || ||||||| ||||| || ||||| || ||||||||| |||||||||||
Sbjct 840539 ACGAAGTGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGT 840480
Query 65405 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65445
| | | | |||||| | || |||| || || || |||
Sbjct 840479 TCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 840439
>seq8
Length=1553183
Score = 214 bits (236), Expect = 9e-51
Identities = 471/705 (67%), Gaps = 21/705 (3%)
Strand=Plus/Plus
Query 64750 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 64809
|| || |||||||| || ||| | | || || ||| | || || || || |||
Sbjct 1134788 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTCTGCCG 1134847
Query 64810 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 64869
| ||||| ||| | |||||||||||||| ||| ||||| || | || ||| ||
Sbjct 1134848 CGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCCCTG 1134907
Query 64870 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 64929
|| || | || | || |||||| || |||| | |||| || || ||||| ||
Sbjct 1134908 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 1134967
Query 64930 TCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 64989
| || ||||||| ||||| || ||| || || || | || ||||| || |
Sbjct 1134968 GCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 1135027
Query 64990 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65049
||||| || ||||||| ||||| ||||| |||| ||| || || |||||||
Sbjct 1135028 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 1135085
Query 65050 CTGTCCATCG------TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 65103
|||||| | || || || |||||||||||| ||||| |||||||||||
Sbjct 1135086 ----CCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTT 1135141
Query 65104 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATG 65163
|| ||||| || || ||||| || ||||| |||||||| || || ||| |||||| ||
Sbjct 1135142 GAGGGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTG 1135201
Query 65164 CGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 65223
|||||||| || || | | | || | ||||| ||| | ||| | |||||| |
Sbjct 1135202 CGCAAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATT 1135261
Query 65224 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGAAAG 65280
|| ||| || || |||| | ||| |||| || || || || ||||| ||
Sbjct 1135262 CGTCTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAAC 1135315
Query 65281 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65340
|| ||| ||| || || || || || ||||| | ||||| |||| || |||||
Sbjct 1135316 GCCCTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGAC 1135375
Query 65341 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCG 65400
|| || | || || |||| ||||| || ||||| || ||||||||| ||||||||
Sbjct 1135376 AAGGACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCG 1135435
Query 65401 CCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65445
||| | | | | |||||| | || |||| || || || |||
Sbjct 1135436 CCGTTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 1135480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 238944764877520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |