Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq72 140 1e-27 seq328 120 9e-22 seq3 98.7 3e-15 seq22 95.1 4e-14 >seq72 Length=518284 Score = 140 bits (154), Expect = 1e-27 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||| ||||| || || || ||| | |||||| || || ||| Sbjct 385663 TCCATAGCCTTGATAAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTCACCGCCGTA 385604 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| ||||||||||||||| | | ||| | || ||| || || Sbjct 385603 TCAATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTC-TGAGGGCGTCAGACC 385545 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | || |||| || || || |||| |||||| || ||| |||| | || Sbjct 385544 GGCCAGATACGAATTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAA 385485 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||||||| | || | ||||| ||||||||||| || || |||||||| || Sbjct 385484 ATGCGGCAGGGTGCGCTTACGGAATCCGTACGGGATACGCTTACCCTCCACGTTCTGTTG 385425 Query 302814 TCCCAGGCACGAAATCATCTG 302834 ||||| ||| | ||| | ||| Sbjct 385424 TCCCACGCAAGCAATAACCTG 385404 >seq328 Length=165906 Score = 120 bits (132), Expect = 9e-22 Identities = 608/951 (64%), Gaps = 21/951 (2%) Strand=Plus/Minus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || ||||| ||||| || ||||| | ||| |||||||| ||||| | ||| Sbjct 106677 GTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTT-CTTAG 106619 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCT 155523 ||||| | ||| ||| | || | || || || ||||| | |||| || | | | Sbjct 106618 CTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTT 106559 Query 155524 TGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAA 155583 ||||||| ||| |||||| | ||||||||||| || |||||||||| || Sbjct 106558 TGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTACAAACATGTTAA 106499 Query 155584 GACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCT 155643 | |||| || || | ||| || || || |||| | | ||| || ||||| | Sbjct 106498 GTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAATTT 106439 Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703 | || | ||| | || || ||||| | ||| | || || || || |||| Sbjct 106438 CTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTAC 106379 Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763 | | |||||| | || ||||||||| | || || || | || | || | ||| | Sbjct 106378 AGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGCAA 106319 Query 155764 GCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACTCATATTTCATA 155822 ||| | | || || | | | | | || | || || ||||||||| | | Sbjct 106318 ACCATAACGACTGAGCTTTCACT-GTTCGATTAGCACGTCCCTCTTGCTCATATTTGACA 106260 Query 155823 TACAGCGTTCGGTAATCCT-CACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 || || | | ||| | | || || ||| |||||||| || |||| || || Sbjct 106259 TAAAGT-TGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGACA 106201 Query 155882 AAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAAT 155941 | || |||||| ||| ||| | || || | ||| || | ||| ||| | Sbjct 106200 CATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAA 106141 Query 155942 AGCATAGAAAAGGTCCCTTGCCT--TTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 |||||| ||||| |||| ||| || || || || | ||| ||||| | || ||| Sbjct 106140 AGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTC-CAGTGTTTCTTTTG-AGGTCT 106083 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 || ||||| || ||| | ||| ||||| | ||| |||||||| |||| || Sbjct 106082 AAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTT 106023 Query 156060 TTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA-T 156115 || ||||| |||||| ||||| || || ||||| || || | |||||| |||| | Sbjct 106022 TTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCTTAGCATTGGAACT 105963 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGAACATT 156172 ||| ||||| ||||| || || ||||| | ||||| ||| || | |||| | Sbjct 105962 AAT-CCATTTGAAGTACCGTTCGTTCCAC--ATATG-GAAGTGCCTTTGGCACGAATACA 105907 Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 ||||| || |||||||| ||||| | |||| ||||| || |||| | || | Sbjct 105906 ATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATTGTTCAACTGA 105847 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTG 156292 || |||||||||||||| ||||| | ||||| | ||| | || || || ||| Sbjct 105846 TTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACATGAGGATAGTTG 105787 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 ||| || ||| |||| || || || || | ||||| ||||||| Sbjct 105786 AGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAAATA 105736 >seq3 Length=3134003 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/147 (77%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||| || |||||||||||||||||||| ||||| |||||| | Sbjct 3112901 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATGATGATATCGGGGGCCAGTCCCT 3112842 Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCC 251960 | ||| |||||||||||||||| | | | ||| | | | || |||||||| || || Sbjct 3112841 C-GCATGTGAAGGGCATATCCTCCTGC-CGATACTGGATGCCGCACGTTCCCTTCTGCCC 3112784 Query 251961 GTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||| ||||| || || || Sbjct 3112783 GTGACGAGAGGCAAACTTGTCGCCGAT 3112757 Score = 95.1 bits (104), Expect = 4e-14 Identities = 174/255 (68%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| |||||| | |||||||| || | ||| || | ||| | || Sbjct 3113407 GGCGATCAGGCCACAGAAATTACAGATATGGACGCGATACGGATCGGAAACCTCAAAGAG 3113348 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || || | ||| | | || ||||| || ||| |||||||||||||| ||||| Sbjct 3113347 ACGCTCCCTAAGGAATTGGGCGGCGCCGTGAGAGATCTGGCAATCACGCTCCATCTCACC 3113288 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 |||||| || || || || || || || ||||| |||||| || ||| | | Sbjct 3113287 GAAACGCAGGCCGCCGTCACGGGCTCTGCCCTCCATAGGCTGTCGCACCAGAATCTGGAC 3113228 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||| ||| || || ||| ||| || | ||||||||||| |||||||| || | Sbjct 3113227 AGGGCCGCGGGCACGTGAATGGATCTTGTCGTCCACCATATGCTTCAGACGCTGATAATA 3113168 Query 251643 TGCGGGACCGATGAA 251657 || ||| || | ||| Sbjct 3113167 TGTGGGTCCCAAGAA 3113153 >seq22 Length=1073832 Score = 95.1 bits (104), Expect = 4e-14 Identities = 197/282 (70%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT-TGC 289088 ||||| || ||||||||||||||||| || | || || | | || ||| || | | Sbjct 978839 CCAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTT-TCTTGCCCTGCTC 978781 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | |||||||| || |||| ||| ||| ||||||| ||||| |||||| | Sbjct 978780 GAACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACC 978721 Query 289149 GGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | |||| ||| | ||||| ||||| || || | || | ||||| || || | Sbjct 978720 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTT 978662 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC- 289266 | |||||||| || || || | || || ||||||| |||| || | ||||| Sbjct 978661 TCCCTGTTCCCGGCGGGCCGCACAGCAGCAC-GCCTTTGGGGATTTTACCGC-CCAGACG 978604 Query 289267 -TTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCT 289306 || |||||| ||| ||||| | ||| || || ||||||| Sbjct 978603 GGTAAATTTCTGCGGG-TCTTTCAGAAAATCAACGATTTCCT 978563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471781110422095