Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq72 140 1e-27
seq328 120 9e-22
seq3 98.7 3e-15
seq22 95.1 4e-14
>seq72
Length=518284
Score = 140 bits (154), Expect = 1e-27
Identities = 189/261 (72%), Gaps = 2/261 (1%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| | ||| ||||| || || || ||| | |||||| || || |||
Sbjct 385663 TCCATAGCCTTGATAAGACGTCGCTGGATGTAGCCGGTTTCGGCTGTTTTCACCGCCGTA 385604
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693
||||| ||||| ||||||| ||||||||||||||| | | ||| | || ||| || ||
Sbjct 385603 TCAATGAGACCCTCACGACCGCCCATAGCATGGAAGTAGAACTC-TGAGGGCGTCAGACC 385545
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753
| | | | || |||| || || || |||| |||||| || ||| |||| | ||
Sbjct 385544 GGCCAGATACGAATTCTCCACAAAGCCGCGCGACTCGGGACCATAATCGTCCTTGATGAA 385485
Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813
|| |||||||| | || | ||||| ||||||||||| || || |||||||| ||
Sbjct 385484 ATGCGGCAGGGTGCGCTTACGGAATCCGTACGGGATACGCTTACCCTCCACGTTCTGTTG 385425
Query 302814 TCCCAGGCACGAAATCATCTG 302834
||||| ||| | ||| | |||
Sbjct 385424 TCCCACGCAAGCAATAACCTG 385404
>seq328
Length=165906
Score = 120 bits (132), Expect = 9e-22
Identities = 608/951 (64%), Gaps = 21/951 (2%)
Strand=Plus/Minus
Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464
||| || ||||| ||||| || ||||| | ||| |||||||| ||||| | |||
Sbjct 106677 GTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTT-CTTAG 106619
Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCT 155523
||||| | ||| ||| | || | || || || ||||| | |||| || | | |
Sbjct 106618 CTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTT 106559
Query 155524 TGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAA 155583
||||||| ||| |||||| | ||||||||||| || |||||||||| ||
Sbjct 106558 TGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTTTTCTGGTGTTACAAACATGTTAA 106499
Query 155584 GACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCT 155643
| |||| || || | ||| || || || |||| | | ||| || ||||| |
Sbjct 106498 GTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAATTT 106439
Query 155644 CACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTAC 155703
| || | ||| | || || ||||| | ||| | || || || || ||||
Sbjct 106438 CTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTAC 106379
Query 155704 AAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTA 155763
| | |||||| | || ||||||||| | || || || | || | || | ||| |
Sbjct 106378 AGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGCAA 106319
Query 155764 GCCAGAGGTCACGGGCATTAATTTGCTTG-TTGTATCTGCCTTCCGACTCATATTTCATA 155822
||| | | || || | | | | | || | || || ||||||||| | |
Sbjct 106318 ACCATAACGACTGAGCTTTCACT-GTTCGATTAGCACGTCCCTCTTGCTCATATTTGACA 106260
Query 155823 TACAGCGTTCGGTAATCCT-CACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881
|| || | | ||| | | || || ||| |||||||| || |||| || ||
Sbjct 106259 TAAAGT-TGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGACA 106201
Query 155882 AAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAAT 155941
| || |||||| ||| ||| | || || | ||| || | ||| ||| |
Sbjct 106200 CATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAA 106141
Query 155942 AGCATAGAAAAGGTCCCTTGCCT--TTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999
|||||| ||||| |||| ||| || || || || | ||| ||||| | || |||
Sbjct 106140 AGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTTC-CAGTGTTTCTTTTG-AGGTCT 106083
Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059
|| ||||| || ||| | ||| ||||| | ||| |||||||| |||| ||
Sbjct 106082 AAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTT 106023
Query 156060 TTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAA-T 156115
|| ||||| |||||| ||||| || || ||||| || || | |||||| |||| |
Sbjct 106022 TTTCCACCTCCCTGATCAACATATCGTGCCACATTATTAAATACTCTTAGCATTGGAACT 105963
Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGAACATT 156172
||| ||||| ||||| || || ||||| | ||||| ||| || | |||| |
Sbjct 105962 AAT-CCATTTGAAGTACCGTTCGTTCCAC--ATATG-GAAGTGCCTTTGGCACGAATACA 105907
Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232
||||| || |||||||| ||||| | |||| ||||| || |||| | || |
Sbjct 105906 ATGAACATTAAGTCCAATTCCACCCGCTGATTTGGAAATCATTGCACATTGTTCAACTGA 105847
Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTG 156292
|| |||||||||||||| ||||| | ||||| | ||| | || || || |||
Sbjct 105846 TTTAAAAATACCTTCAATTGAATCCGAATTCATTGTCAAAAGAAAACATGAGGATAGTTG 105787
Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343
||| || ||| |||| || || || || | ||||| |||||||
Sbjct 105786 AGGGCGATTTGTAGCAGCAGCAAAAAGAGTTGGCGAGGCATGCGTAAAATA 105736
>seq3
Length=3134003
Score = 98.7 bits (108), Expect = 3e-15
Identities = 113/147 (77%), Gaps = 4/147 (3%)
Strand=Plus/Minus
Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902
|||| ||||||||| ||| || |||||||||||||||||||| ||||| |||||| |
Sbjct 3112901 CGATTGTCATACGAGAGGGGATGGCATGGGGATTGATGATGATATCGGGGGCCAGTCCCT 3112842
Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCC 251960
| ||| |||||||||||||||| | | | ||| | | | || |||||||| || ||
Sbjct 3112841 C-GCATGTGAAGGGCATATCCTCCTGC-CGATACTGGATGCCGCACGTTCCCTTCTGCCC 3112784
Query 251961 GTGACGAGAACTGAACTTATCACCAAT 251987
||||||||| ||||| || || ||
Sbjct 3112783 GTGACGAGAGGCAAACTTGTCGCCGAT 3112757
Score = 95.1 bits (104), Expect = 4e-14
Identities = 174/255 (68%), Gaps = 0/255 (0%)
Strand=Plus/Minus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
|||||| || ||||| |||||| | |||||||| || | ||| || | ||| | ||
Sbjct 3113407 GGCGATCAGGCCACAGAAATTACAGATATGGACGCGATACGGATCGGAAACCTCAAAGAG 3113348
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| || | ||| | | || ||||| || ||| |||||||||||||| |||||
Sbjct 3113347 ACGCTCCCTAAGGAATTGGGCGGCGCCGTGAGAGATCTGGCAATCACGCTCCATCTCACC 3113288
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
|||||| || || || || || || || ||||| |||||| || ||| | |
Sbjct 3113287 GAAACGCAGGCCGCCGTCACGGGCTCTGCCCTCCATAGGCTGTCGCACCAGAATCTGGAC 3113228
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642
||| ||| || || ||| ||| || | ||||||||||| |||||||| || |
Sbjct 3113227 AGGGCCGCGGGCACGTGAATGGATCTTGTCGTCCACCATATGCTTCAGACGCTGATAATA 3113168
Query 251643 TGCGGGACCGATGAA 251657
|| ||| || | |||
Sbjct 3113167 TGTGGGTCCCAAGAA 3113153
>seq22
Length=1073832
Score = 95.1 bits (104), Expect = 4e-14
Identities = 197/282 (70%), Gaps = 10/282 (4%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT-TGC 289088
||||| || ||||||||||||||||| || | || || | | || ||| || | |
Sbjct 978839 CCAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTT-TCTTGCCCTGCTC 978781
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|| | || | |||||||| || |||| ||| ||| ||||||| ||||| |||||| |
Sbjct 978780 GAACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACC 978721
Query 289149 GGATA-CTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
||| | |||| ||| | ||||| ||||| || || | || | ||||| || || |
Sbjct 978720 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTT 978662
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC- 289266
| |||||||| || || || | || || ||||||| |||| || | |||||
Sbjct 978661 TCCCTGTTCCCGGCGGGCCGCACAGCAGCAC-GCCTTTGGGGATTTTACCGC-CCAGACG 978604
Query 289267 -TTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCT 289306
|| |||||| ||| ||||| | ||| || || |||||||
Sbjct 978603 GGTAAATTTCTGCGGG-TCTTTCAGAAAATCAACGATTTCCT 978563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471781110422095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |