Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq71 159 4e-33 seq358 136 5e-26 seq65 129 7e-24 seq1330 122 1e-21 seq268 114 2e-19 seq111 113 6e-19 >seq71 Length=537415 Score = 159 bits (176), Expect = 4e-33 Identities = 248/349 (71%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||||||| ||| ||| ||||| || |||| | || Sbjct 119987 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTACTCGG 120046 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||||||||| || || || || ||| ||||||||||| |||| || Sbjct 120047 AGACAGCTACAAGGAGGCCGTGCTAGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 120106 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 ||||| || | |||||| ||| ||| ||| ||| ||||| || || Sbjct 120107 GGTGCGAAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTGCCCAAGGGTCGG 120164 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 120165 CACAAGATCGTTATCCTGGACGAGGCAGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 120224 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| ||||||||| || || ||||| || |||||||| Sbjct 120225 CGTCGCACCATGGAGATCTACAGCAACACGACACGGTTCGCCCTAGCCTGCAACACCAGC 120284 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTT 1574239 || | |||||||| || | | |||||| |||||||| |||||||| Sbjct 120285 GAGAAGATCATCGAGCCCAT--ACAGTCGCGATGCGCCATGCTGCGCTT 120331 >seq358 Length=123483 Score = 136 bits (150), Expect = 5e-26 Identities = 327/489 (67%), Gaps = 8/489 (2%) Strand=Plus/Minus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| || ||||||||||| ||| || || ||||| ||||| || | ||||| || | Sbjct 19501 AAGGTGAAGATCTTGCGCTGATCGACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 19442 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282 ||||| || ||||||| |||||||||| || ||||| | || | Sbjct 19441 TCGTCCAGTGCCTGCAGTCCTGGGTAGAGCAGACCCGAGAGCAGCGGATATTCCACCTGC 19382 Query 1852283 TTGACCACCTGAGCGGCGGCCTT--TTGCGCCGTGCCGGTGCG-CACGTGCGCCGCGAGT 1852339 || || |||| ||| | ||||| | || ||||| |||| ||| || || || Sbjct 19381 TTAACGACCTCTGCGCCCGCCTTCCTGGCATCGTGC---TGCGTCACCACCGACGATAGC 19325 Query 1852340 CGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCG 1852399 ||| | ||| || | || | | |||||| ||| |||| || |||| Sbjct 19324 TTGTACACGTCCAGAGTATACTCTTTGGACAGCTGGTAGTCGCTGCCCTTGACGAACTTC 19265 Query 1852400 AGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCA 1852458 || |||||||||| |||||| ||| |||||||||||||| | |||||| | Sbjct 19264 AGCTTCTCCAGCGGCACTCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTA 19206 Query 1852459 GCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCAC 1852518 || || | || | ||| |||||||| ||| |||||| || | ||| |||| Sbjct 19205 CTGGGTGCGCAGCTCCAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGCAG 19146 Query 1852519 GTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGAT 1852578 || ||||| ||||| | ||| |||||||||| || || || || | || | || Sbjct 19145 ATCCGCAAACAGGATGGTCACCTCGCAGCCGGCCTTCAGGAAATCTGCAATCTTCGACAT 19086 Query 1852579 GGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAG 1852638 ||||||||||||| | | || || || ||||||| |||||||||||| || || |||| Sbjct 19085 GGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTGCCCCAGTAGATCTTCAG 19026 Query 1852639 GGGGCGCTC 1852647 | |||||| Sbjct 19025 GTCGCGCTC 19017 >seq65 Length=536665 Score = 129 bits (142), Expect = 7e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1592103 ACCAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGC 1592162 || ||||| | |||||| ||||| |||||||| | || || | ||||| ||| Sbjct 82492 ACGAGAAGGGAACCGACAACATCATCTCGTGGGACTATGATTTCCTTAAGGTCGACCAGG 82433 Query 1592163 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATC 1592222 ||| ||||| ||| | || || |||||||| || || || |||||| | ||||| ||| Sbjct 82432 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAATC 82373 Query 1592223 TTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGA 1592282 | |||||| | |||||||||||||||||||||||| | || |||||||| || ||| Sbjct 82372 TGACTTGCAAGACCGTGGCCAACATGATCAAGGGCAAGACTCCAGAGGAGATACGTCAGA 82313 Query 1592283 CCTTTAACATCAAG 1592296 | || ||||| ||| Sbjct 82312 CATTCAACATTAAG 82299 >seq1330 Length=3390 Score = 122 bits (134), Expect = 1e-21 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||||||||||||| |||||||| || || | || || ||| || Sbjct 548 AGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTTAAGGTAGACCAGGGCA 489 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | ||||| ||| | ||||| |||||||| || || || || ||| | ||||||| || Sbjct 488 CACTCTTCGAGCTAATCCTGGCCGCCAATTATCTGGATATTAAGGGTTTGCTCGAACTGA 429 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||| || ||||| ||||||||| | || |||||||| || ||||| | Sbjct 428 CTTGCAAGACCGTGGCAAATATGATTAAGGGCAAGACCCCAGAGGAGATACGTAAGACTT 369 Query 1592286 TTAACATCAA 1592295 | ||||| || Sbjct 368 TCAACATTAA 359 >seq268 Length=158303 Score = 114 bits (126), Expect = 2e-19 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||||||||||||| |||||||| || || | || || ||| || Sbjct 88586 AGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTTAAAGTAGACCAGGGCA 88527 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | ||||| ||| | || || |||||||| || || || |||||| | ||||||| || Sbjct 88526 CACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAACTGA 88467 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | ||||| |||||||| ||||| ||| | || |||||||| || | || | Sbjct 88466 CTTGCAAAACCGTGGCAAACATGATTAAGGGGAAGACCCCAGAGGAGATACGTAGAACTT 88407 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 88406 TCAACATCAAG 88396 >seq111 Length=362587 Score = 113 bits (124), Expect = 6e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| ||| ||||| |||||| |||| || |||||||||||||| ||||| Sbjct 244680 ACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 244739 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||| ||||||||||| | | || ||||| ||| ||||| || || ||||| ||||| Sbjct 244740 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGGCTGCAAA 244799 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323 | | || | |||||||||||| || Sbjct 244800 GGCAATAATACGCTCGGCAAAGTTG 244824 Score = 111 bits (122), Expect = 2e-18 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | |||||| ||||| |||||||||||||| ||| | | |||| | | || Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| |||| || || |||| |||||| || ||||| ||| ||| ||||| Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GGAC 869811 || ||||| ||||| ||| |||| |||||||| |||| | || |||||| | | Sbjct 245083 AAGGCCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGACGGGCCCAGTCTGTC 245142 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | || | || |||||||| || | ||||||| ||||| ||||||| Sbjct 245143 GCGTCCTTCGAT-AGATCCACCTCTTCCACAGTCCAGAAGGAGGCTTCGGCCT 245194 Score = 91.5 bits (100), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 ||| || ||||| ||||| || || || ||||||| ||||| | ||| || || Sbjct 244392 CTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAGGGATTCTT 244451 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 || |||||| ||| | |||||| | ||||| || ||||||||||| || || Sbjct 244452 AGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACGATCGGCGACAAATTCAAT 244511 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 ||||||| |||||||| || ||||||||| || | ||||| | ||| | | Sbjct 244512 GTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGAG 244571 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||||| |||||| ||||| || || ||||||| Sbjct 244572 GAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCT 244609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106980404838395