Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq71 159 4e-33
seq358 136 5e-26
seq65 129 7e-24
seq1330 122 1e-21
seq268 114 2e-19
seq111 113 6e-19
>seq71
Length=537415
Score = 159 bits (176), Expect = 4e-33
Identities = 248/349 (71%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954
|||||| || ||| ||||||||||||| ||| ||| ||||| || |||| | ||
Sbjct 119987 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTACTCGG 120046
Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014
| | | | ||||||||||| || || || || ||| ||||||||||| |||| ||
Sbjct 120047 AGACAGCTACAAGGAGGCCGTGCTAGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 120106
Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072
||||| || | |||||| ||| ||| ||| ||| ||||| || ||
Sbjct 120107 GGTGCGAAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACGCTGCCCAAGGGTCGG 120164
Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132
|||||| | | ||||| |||||||| ||| || | ||| || ||||||||||| |||
Sbjct 120165 CACAAGATCGTTATCCTGGACGAGGCAGACAGCATGACGGAGGGCGCCCAGCAGGCGCTG 120224
Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192
|| ||||||||| | ||| ||||||||| || || ||||| || ||||||||
Sbjct 120225 CGTCGCACCATGGAGATCTACAGCAACACGACACGGTTCGCCCTAGCCTGCAACACCAGC 120284
Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTT 1574239
|| | |||||||| || | | |||||| |||||||| ||||||||
Sbjct 120285 GAGAAGATCATCGAGCCCAT--ACAGTCGCGATGCGCCATGCTGCGCTT 120331
>seq358
Length=123483
Score = 136 bits (150), Expect = 5e-26
Identities = 327/489 (67%), Gaps = 8/489 (2%)
Strand=Plus/Minus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
|||| || ||||||||||| ||| || || ||||| ||||| || | ||||| || |
Sbjct 19501 AAGGTGAAGATCTTGCGCTGATCGACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 19442
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282
||||| || ||||||| |||||||||| || ||||| | || |
Sbjct 19441 TCGTCCAGTGCCTGCAGTCCTGGGTAGAGCAGACCCGAGAGCAGCGGATATTCCACCTGC 19382
Query 1852283 TTGACCACCTGAGCGGCGGCCTT--TTGCGCCGTGCCGGTGCG-CACGTGCGCCGCGAGT 1852339
|| || |||| ||| | ||||| | || ||||| |||| ||| || || ||
Sbjct 19381 TTAACGACCTCTGCGCCCGCCTTCCTGGCATCGTGC---TGCGTCACCACCGACGATAGC 19325
Query 1852340 CGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCG 1852399
||| | ||| || | || | | |||||| ||| |||| || ||||
Sbjct 19324 TTGTACACGTCCAGAGTATACTCTTTGGACAGCTGGTAGTCGCTGCCCTTGACGAACTTC 19265
Query 1852400 AGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCA 1852458
|| |||||||||| |||||| ||| |||||||||||||| | |||||| |
Sbjct 19264 AGCTTCTCCAGCGGCACTCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTA 19206
Query 1852459 GCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCAC 1852518
|| || | || | ||| |||||||| ||| |||||| || | ||| ||||
Sbjct 19205 CTGGGTGCGCAGCTCCAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGCAG 19146
Query 1852519 GTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGAT 1852578
|| ||||| ||||| | ||| |||||||||| || || || || | || | ||
Sbjct 19145 ATCCGCAAACAGGATGGTCACCTCGCAGCCGGCCTTCAGGAAATCTGCAATCTTCGACAT 19086
Query 1852579 GGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAG 1852638
||||||||||||| | | || || || ||||||| |||||||||||| || || ||||
Sbjct 19085 GGGCACAAAGTAGGCGACATGTGGCTTTCCCGTCGTCGCCGTGCCCCAGTAGATCTTCAG 19026
Query 1852639 GGGGCGCTC 1852647
| ||||||
Sbjct 19025 GTCGCGCTC 19017
>seq65
Length=536665
Score = 129 bits (142), Expect = 7e-24
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 1592103 ACCAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGC 1592162
|| ||||| | |||||| ||||| |||||||| | || || | ||||| |||
Sbjct 82492 ACGAGAAGGGAACCGACAACATCATCTCGTGGGACTATGATTTCCTTAAGGTCGACCAGG 82433
Query 1592163 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATC 1592222
||| ||||| ||| | || || |||||||| || || || |||||| | ||||| |||
Sbjct 82432 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAATC 82373
Query 1592223 TTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGA 1592282
| |||||| | |||||||||||||||||||||||| | || |||||||| || |||
Sbjct 82372 TGACTTGCAAGACCGTGGCCAACATGATCAAGGGCAAGACTCCAGAGGAGATACGTCAGA 82313
Query 1592283 CCTTTAACATCAAG 1592296
| || ||||| |||
Sbjct 82312 CATTCAACATTAAG 82299
>seq1330
Length=3390
Score = 122 bits (134), Expect = 1e-21
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||||||||||||| |||||||| || || | || || ||| ||
Sbjct 548 AGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTTAAGGTAGACCAGGGCA 489
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| ||||| ||| | ||||| |||||||| || || || || ||| | ||||||| ||
Sbjct 488 CACTCTTCGAGCTAATCCTGGCCGCCAATTATCTGGATATTAAGGGTTTGCTCGAACTGA 429
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | ||||| || ||||| ||||||||| | || |||||||| || ||||| |
Sbjct 428 CTTGCAAGACCGTGGCAAATATGATTAAGGGCAAGACCCCAGAGGAGATACGTAAGACTT 369
Query 1592286 TTAACATCAA 1592295
| ||||| ||
Sbjct 368 TCAACATTAA 359
>seq268
Length=158303
Score = 114 bits (126), Expect = 2e-19
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||||||||||||| |||||||| || || | || || ||| ||
Sbjct 88586 AGAAGCGCACCGACGACATCATCTCGTGGGACGCCGATTTCCTTAAAGTAGACCAGGGCA 88527
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| ||||| ||| | || || |||||||| || || || |||||| | ||||||| ||
Sbjct 88526 CACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAACTGA 88467
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
||||| | ||||| |||||||| ||||| ||| | || |||||||| || | || |
Sbjct 88466 CTTGCAAAACCGTGGCAAACATGATTAAGGGGAAGACCCCAGAGGAGATACGTAGAACTT 88407
Query 1592286 TTAACATCAAG 1592296
| |||||||||
Sbjct 88406 TCAACATCAAG 88396
>seq111
Length=362587
Score = 113 bits (124), Expect = 6e-19
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||||||||| ||| ||||| |||||| |||| || |||||||||||||| |||||
Sbjct 244680 ACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 244739
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| ||||||||||| | | || ||||| ||| ||||| || || ||||| |||||
Sbjct 244740 CTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTGAAGAAGATTCCTTCCACGGCTGCAAA 244799
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323
| | || | |||||||||||| ||
Sbjct 244800 GGCAATAATACGCTCGGCAAAGTTG 244824
Score = 111 bits (122), Expect = 2e-18
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| | |||||| ||||| |||||||||||||| ||| | | |||| | | ||
Sbjct 244963 GAGTGCACGTTCTCCATGGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCCGTGATCTGC 245022
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
||||||| |||| || || |||| |||||| || ||||| ||| ||| |||||
Sbjct 245023 ACCTCCTGACTGAAGCGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCAGCGAAG 245082
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GGAC 869811
|| ||||| ||||| ||| |||| |||||||| |||| | || |||||| | |
Sbjct 245083 AAGGCCAGCACGTGGGAGATGAAGTAGCGCTCGTTGTCGGTCAGACGGGCCCAGTCTGTC 245142
Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
| | || | || |||||||| || | ||||||| ||||| |||||||
Sbjct 245143 GCGTCCTTCGAT-AGATCCACCTCTTCCACAGTCCAGAAGGAGGCTTCGGCCT 245194
Score = 91.5 bits (100), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
||| || ||||| ||||| || || || ||||||| ||||| | ||| || ||
Sbjct 244392 CTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAGGGATTCTT 244451
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
|| |||||| ||| | |||||| | ||||| || ||||||||||| || ||
Sbjct 244452 AGTGTTGTAGATCTTACCCACACCGAGCTCCATCAGCAGACGATCGGCGACAAATTCAAT 244511
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896
||||||| |||||||| || ||||||||| || | ||||| | ||| | |
Sbjct 244512 GTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGAG 244571
Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
||||||| |||||| ||||| || || |||||||
Sbjct 244572 GAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCT 244609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106980404838395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |