Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq303 147 2e-30 seq51 86.0 5e-12 seq6 86.0 5e-12 >seq303 Length=142959 Score = 147 bits (162), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||||| ||||||| ||||||||||| || || |||||||||||||| || ||||||| Sbjct 32463 ATCGAAAAGCGTTTGGGCGCCCAGCTCACAGCCAAAGTACTTTGTCGGATAGGTGGCCGG 32522 Query 34497 ACGTCCA--AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 ||| ||| ||||| | || | ||| | ||| || || | ||||| |||||||||||| Sbjct 32523 ACGGCCAATAGCGCGT--GCAACTTCAGCCATATTAACCAAAACAGTTTTGATGCCGTTG 32580 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || |||||||| || || || | |||||||||||| || || ||||| || | | Sbjct 32581 CCTTTTCCTTCTACTTTTGCTTGAAGGCGCGGCATTTTATAACGATAGAAGATATCTGTC 32640 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCAT 34643 ||| | ||||||||||| || || |||| Sbjct 32641 ACACTACGGTTAACGTTGACGGTGGCCAT 32669 >seq51 Length=625475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||||||| || ||||| |||||||| || ||||||| || ||||||||| | ||| || Sbjct 71254 GGACTGCATGGATTCCATGTGCACGAGTTCGGCGACAACACCAACGGCTGCATGTCGTCC 71313 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288 || |||||||||||| | | ||| | |||||||| ||| || || |||| | | Sbjct 71314 GGCCCCCACTTCAATCCC-CGCAGCAAGGAGCACGGTGCCCCCACCGACG-AGAACCGCC 71371 Query 107289 ACGTCGGCGATCTGGGCAAC 107308 || | ||||| |||||||| Sbjct 71372 ACTTGGGCGACTTGGGCAAC 71391 >seq6 Length=3104374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| |||||| | || ||||| ||||| ||| | || ||||| Sbjct 2898251 AAAATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCC 2898310 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | || || ||||| ||||| || ||| | ||| ||| Sbjct 2898311 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGAT 2898370 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || || ||||||||||||| | | || || | || ||| Sbjct 2898371 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 2898430 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || ||||| ||||| | | ||||| || || Sbjct 2898431 AACATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 2898480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831864033955