Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_022059.1
Length=77367
Score E
Sequences producing significant alignments: (Bits) Value
seq22 199 2e-46
seq8 187 1e-42
>seq22
Length=1073832
Score = 199 bits (220), Expect = 2e-46
Identities = 463/694 (67%), Gaps = 13/694 (2%)
Strand=Plus/Minus
Query 67568 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 67627
|||||||| || || | | || || ||| | || || || || | ||| | |||
Sbjct 841125 ATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCGCGTGGC 841066
Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687
|| || | || |||||||| ||||| ||| || || | ||| || ||| || ||
Sbjct 841065 CGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTGCATGCC 841006
Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 67747
| || | ||||||||| || |||| | |||| || || || |||||| | ||
Sbjct 841005 ATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACATGCCCTT 840946
Query 67748 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 67807
||||| | |||||| ||| || || ||||| || || || || | ||||||
Sbjct 840945 GACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGCCAGCCA 840886
Query 67808 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 67867
|| ||||||| ||||| ||||| |||| ||| || || ||||||| | ||
Sbjct 840885 GATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCGC--TATCG 840828
Query 67868 ATCATC--GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACA 67925
|| | || ||||| ||||||||| || || || || || ||||| || || || |
Sbjct 840827 ATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGGGCGATA 840768
Query 67926 TCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGA 67985
| || ||| || ||||| ||||||||||| || ||| ||||||| ||||||||||||
Sbjct 840767 TGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCAAGCTGA 840708
Query 67986 CCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGA 68045
|||| | |||| || | ||||| | | | | |||| ||| | || ||| |
Sbjct 840707 CCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTCTGAAAA 840648
Query 68046 TCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCTCTGCGCT 68102
| || |||| | ||| |||| || || |||||||| || || || ||| |
Sbjct 840647 TTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCCTGAAAT 840594
Query 68103 TCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGG 68162
| || || || ||||| ||||| | ||| | |||| || ||||| || || |
Sbjct 840593 TTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGGACGAAG 840534
Query 68163 CTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCC 68222
|| ||||||| || ||||| || || || ||||||||| |||| || ||| | | |
Sbjct 840533 TGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGTTCAGGC 840474
Query 68223 AGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 68256
||| |||||| |||| | || ||||| || ||
Sbjct 840473 AGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 840440
>seq8
Length=1553183
Score = 187 bits (206), Expect = 1e-42
Identities = 427/641 (67%), Gaps = 9/641 (1%)
Strand=Plus/Plus
Query 67619 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 67678
||| | ||||| || | || |||||||| || || ||||| || | ||| || |
Sbjct 1134845 CCGCGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCC 1134904
Query 67679 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 67738
|| || || | || | ||||||||| || |||| | |||| || || || |||
Sbjct 1134905 CTGCATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAA 1134964
Query 67739 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 67798
||| |||| ||||| | ||||| ||| || || ||||| || || || || |
Sbjct 1134965 CATGCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATC 1135024
Query 67799 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 67858
|||||||| ||||||| ||||| ||||| |||| ||| || || ||||||
Sbjct 1135025 AGCCAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGC 1135084
Query 67859 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 67918
| | | | || ||||| |||||||||||| ||||| || || ||||| ||
Sbjct 1135085 GCCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTTGAG 1135144
Query 67919 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 67978
|| || || || ||| || ||||| ||||| ||||| |||||| ||||||| |||||
Sbjct 1135145 GGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTGCGC 1135204
Query 67979 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGC 68038
||||||||||| | |||| || | ||||| | | | | |||| ||| | ||
Sbjct 1135205 AAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGT 1135264
Query 68039 GAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACCGGTGGTAAGGCT 68095
||| || || |||| | ||| |||| || || || ||||| || || ||
Sbjct 1135265 CTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAACGCC 1135318
Query 68096 CTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGC 68155
||| || || || || ||||| ||||| | || | |||| || |||||
Sbjct 1135319 CTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGACAAG 1135378
Query 68156 GATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCG 68215
|| || | || || |||| || ||||| || || || ||||||||| |||| || |||
Sbjct 1135379 GACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCGCCG 1135438
Query 68216 CACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 68256
| | |||| |||||| |||| | || ||||| || ||
Sbjct 1135439 TTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGAT 1135479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247443764442480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |