Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_022065.1
Length=74533
Score E
Sequences producing significant alignments: (Bits) Value
seq22 217 7e-52
seq8 208 4e-49
>seq22
Length=1073832
Score = 217 bits (240), Expect = 7e-52
Identities = 471/701 (67%), Gaps = 13/701 (2%)
Strand=Plus/Minus
Query 65033 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65092
|| || |||||||| || ||| | | || || ||| | || || || || | |||
Sbjct 841131 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCG 841072
Query 65093 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65152
| ||||| ||| | |||||||||||||| ||| ||| || || | || ||| ||
Sbjct 841071 CGTGGCCGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTG 841012
Query 65153 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65212
|| || | || | || |||||| || |||| | |||| || || ||||| ||
Sbjct 841011 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 840952
Query 65213 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65272
|||| ||||| | |||||||| ||| || || || | || ||||| || |
Sbjct 840951 GCCCTTGACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 840892
Query 65273 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65332
||||| || ||||||| ||||| ||||| |||| ||| || || |||||||
Sbjct 840891 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 840834
Query 65333 CTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 65390
|| || || | || || || ||||||||| || || || ||||||||||| || |
Sbjct 840833 CTATCGATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGG 840774
Query 65391 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 65450
|||| || || ||||| || ||||| ||||| || || |||||| |||||| ||||||
Sbjct 840773 GCGATATGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCA 840714
Query 65451 AGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCG 65510
|||| ||||| | | | || | ||||| ||| | ||| | |||||| | ||
Sbjct 840713 AGCTGACCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTC 840654
Query 65511 AGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGCAAGGCTT 65567
||| || || |||| | ||| |||| || || ||||| ||||| || ||
Sbjct 840653 TGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCC 840600
Query 65568 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65627
||| || || || || || || ||||| | || || |||| || ||||| |
Sbjct 840599 TGAAATTTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGG 840540
Query 65628 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 65687
| || | || ||||||| ||||| || || || || ||||||||| |||||||||||
Sbjct 840539 ACGAAGTGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGT 840480
Query 65688 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65728
| | | | |||||| | || |||| || || || |||
Sbjct 840479 TCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 840439
>seq8
Length=1553183
Score = 208 bits (230), Expect = 4e-49
Identities = 470/705 (67%), Gaps = 21/705 (3%)
Strand=Plus/Plus
Query 65033 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 65092
|| || |||||||| || ||| | | || || ||| | || || || || |||
Sbjct 1134788 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTCTGCCG 1134847
Query 65093 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 65152
| ||||| ||| | |||||||||||||| ||| ||||| || | || ||| ||
Sbjct 1134848 CGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCCCTG 1134907
Query 65153 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 65212
|| || | || | || |||||| || |||| | |||| || || ||||| ||
Sbjct 1134908 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 1134967
Query 65213 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 65272
| || ||||| | ||||| || ||| || || || | || ||||| || |
Sbjct 1134968 GCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 1135027
Query 65273 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65332
||||| || ||||||| ||||| ||||| |||| ||| || || |||||||
Sbjct 1135028 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 1135085
Query 65333 CTGTCCATCG------TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 65386
|||||| | || || || |||||||||||| ||||| |||||||||||
Sbjct 1135086 ----CCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTT 1135141
Query 65387 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATG 65446
|| ||||| || || ||||| || ||||| |||||||| || || ||| |||||| ||
Sbjct 1135142 GAGGGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTG 1135201
Query 65447 CGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 65506
|||||||| ||||| | | | || | ||||| ||| | ||| | |||||| |
Sbjct 1135202 CGCAAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATT 1135261
Query 65507 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGCAAG 65563
|| ||| || || |||| | ||| |||| || || || || ||||| ||
Sbjct 1135262 CGTCTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAAC 1135315
Query 65564 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 65623
|| ||| ||| || || || || || ||||| | ||||| |||| || |||||
Sbjct 1135316 GCCCTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGAC 1135375
Query 65624 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 65683
|| || | || || |||| ||||| || || || || ||||||||| ||||||||
Sbjct 1135376 AAGGACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCG 1135435
Query 65684 CCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65728
||| | | | | |||||| | || |||| || || || |||
Sbjct 1135436 CCGTTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 1135480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 238375178310290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |