Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq22 212 3e-50 seq8 205 5e-48 >seq22 Length=1073832 Score = 212 bits (234), Expect = 3e-50 Identities = 470/701 (67%), Gaps = 13/701 (2%) Strand=Plus/Minus Query 66145 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66204 || || |||||||| || ||| | | || || ||| | || || || || | ||| Sbjct 841131 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCG 841072 Query 66205 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66264 | ||||| ||| | |||||||||||||| ||| ||| || || | || ||| || Sbjct 841071 CGTGGCCGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTG 841012 Query 66265 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66324 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 841011 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 840952 Query 66325 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66384 |||| ||||| | |||||||| ||| || || || | || ||||| || | Sbjct 840951 GCCCTTGACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 840892 Query 66385 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66444 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 840891 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 840834 Query 66445 CTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 66502 || || || | || || || ||||||||| || || || ||||||||||| || | Sbjct 840833 CTATCGATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGG 840774 Query 66503 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 66562 |||| || || ||||| || ||||| ||||| || || |||||| |||||| |||||| Sbjct 840773 GCGATATGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCA 840714 Query 66563 AGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCG 66622 |||| ||||| | | | || | ||||| ||| | ||| | |||||| | || Sbjct 840713 AGCTGACCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTC 840654 Query 66623 AGAAGATCGGCAACGTGGGCTACGGCCCGAA---CGAGACCACCACGGGCGGCAAGGCTT 66679 ||| || || |||| | ||| ||| || || ||||| ||||| || || Sbjct 840653 TGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCC 840600 Query 66680 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66739 ||| || || || || || || ||||| | || || |||| || ||||| | Sbjct 840599 TGAAATTTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGG 840540 Query 66740 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 66799 | || | || ||||||| ||||| || || || || ||||||||| ||||||||||| Sbjct 840539 ACGAAGTGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGT 840480 Query 66800 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66840 | | | | |||||| | || |||| || || || ||| Sbjct 840479 TCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 840439 >seq8 Length=1553183 Score = 205 bits (226), Expect = 5e-48 Identities = 469/705 (67%), Gaps = 21/705 (3%) Strand=Plus/Plus Query 66145 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66204 || || |||||||| || ||| | | || || ||| | || || || || ||| Sbjct 1134788 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTCTGCCG 1134847 Query 66205 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66264 | ||||| ||| | |||||||||||||| ||| ||||| || | || ||| || Sbjct 1134848 CGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCCCTG 1134907 Query 66265 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66324 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 1134908 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 1134967 Query 66325 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66384 | || ||||| | ||||| || ||| || || || | || ||||| || | Sbjct 1134968 GCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 1135027 Query 66385 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66444 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 1135028 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 1135085 Query 66445 CTGTCCATCG------TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 66498 |||||| | || || || |||||||||||| ||||| ||||||||||| Sbjct 1135086 ----CCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTT 1135141 Query 66499 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATG 66558 || ||||| || || ||||| || ||||| |||||||| || || ||| |||||| || Sbjct 1135142 GAGGGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTG 1135201 Query 66559 CGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 66618 |||||||| ||||| | | | || | ||||| ||| | ||| | |||||| | Sbjct 1135202 CGCAAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATT 1135261 Query 66619 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAA---CGAGACCACCACGGGCGGCAAG 66675 || ||| || || |||| | ||| ||| || || || || ||||| || Sbjct 1135262 CGTCTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAAC 1135315 Query 66676 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66735 || ||| ||| || || || || || ||||| | ||||| |||| || ||||| Sbjct 1135316 GCCCTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGAC 1135375 Query 66736 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66795 || || | || || |||| ||||| || || || || ||||||||| |||||||| Sbjct 1135376 AAGGACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCG 1135435 Query 66796 CCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66840 ||| | | | | |||||| | || |||| || || || ||| Sbjct 1135436 CCGTTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 1135480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244615031153540