Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq71 138 2e-26
seq358 132 8e-25
seq111 125 1e-22
seq65 111 2e-18
seq1330 104 4e-16
seq268 93.3 7e-13
>seq71
Length=537415
Score = 138 bits (152), Expect = 2e-26
Identities = 242/347 (70%), Gaps = 4/347 (1%)
Strand=Plus/Plus
Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091
||| || || ||| ||||||||||||| ||| ||||||||| ||| | || | ||
Sbjct 119987 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTACTCGG 120046
Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151
| | | | ||||||||||| || || ||||| || ||||||||||| | || ||
Sbjct 120047 AGACAGCTACAAGGAGGCCGTGCTAGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 120106
Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCC 2019210
||||| | | |||||| || | ||| | ||| ||||| || || |
Sbjct 120107 GGTGCGAAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACGCTGCCCAAGGGTCGGC 120165
Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270
||||| | | ||||| || ||||| ||| || | ||| || ||||||||||| || |
Sbjct 120166 ACAAGATCGTTATCCTGGACGAGGCAGACAGCATGACGGAGGGCGCCCAGCAGGCGCTGC 120225
Query 2019271 GATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329
| ||| |||||||| | |||| ||||||||| ||||| || || |||||||||||
Sbjct 120226 G-TCGCACCATGGAGATCTACAGCAACACGACACGGTTCGCCCTAGCCTGCAACACCAGC 120284
Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376
|| | ||||||| || | ||| || |||||||| |||||||
Sbjct 120285 GAGAAGATCATCGAGCCCATACAGTCGCGATGCGCCATGCTGCGCTT 120331
>seq358
Length=123483
Score = 132 bits (146), Expect = 8e-25
Identities = 345/519 (66%), Gaps = 8/519 (2%)
Strand=Plus/Minus
Query 2411461 TGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA-AAGGCAAAGATCTT 2411519
||||||||||| |||||||| ||||| | | | || | |||| ||||||||
Sbjct 19546 TGGATGCGCTTCTCGTAGCCCAATTGGGGCAGATACTT-CTCGGAGAAGGTGAAGATCTT 19488
Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579
|||||| ||| || || ||||| ||||| || | ||||| || |||||| || |||||
Sbjct 19487 GCGCTGATCGACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCCTCGTCCAGTGCCTG 19428
Query 2411580 CATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGGGC 2411639
|| ||||||| || |||| |||| | || ||| || |||| ||
Sbjct 19427 CAGTCCTGGGTAGAGCAGACCCGAGAGCAGCGGATATTCCACCTGCTTAACGACCTCTGC 19368
Query 2411640 GGCGGCCTT--TTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGC 2411697
| | ||||| | || ||||| | ||||| || || || | | ||| ||
Sbjct 19367 GCCCGCCTTCCTGGCATCGTGCTGC--GTCACCACCGACGATAGCTTGTACACGTCCAGA 19310
Query 2411698 GTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGG 2411757
|| || | | ||||||| |||||||| || || | || ||||||||
Sbjct 19309 GTATACTCTTTGGACAGCTGGTAGTCGCTGCCCTTGACGAACTTCAGCTTCTCCAGCGGC 19250
Query 2411758 ACGCCAATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTC 2411816
|| || ||| ||| |||||||||||||| | |||||| | || || ||||
Sbjct 19249 ACTCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTACTGGGTGCGCAGCTC 19191
Query 2411817 GACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 2411876
| || |||||||| ||| ||||| || | ||| |||| || ||||| |||||
Sbjct 19190 CAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGCAGATCCGCAAACAGGAT 19131
Query 2411877 CCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC 2411936
||||| || ||||||| || || || || | || | ||||||||||||||| |
Sbjct 19130 GGTCACCTCGCAGCCGGCCTTCAGGAAATCTGCAATCTTCGACATGGGCACAAAGTAGGC 19071
Query 2411937 CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975
| ||| ||||| ||||||| ||| |||||||| || ||
Sbjct 19070 GACATGTGGCTTTCCCGTCGTCGCCGTGCCCCAGTAGAT 19032
>seq111
Length=362587
Score = 125 bits (138), Expect = 1e-22
Identities = 228/330 (69%), Gaps = 9/330 (3%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||||||||| ||| ||||| |||||| ||| || |||||||||||||| |||||
Sbjct 244680 ACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 244739
Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||| ||||||||||| |||| || ||||| ||| ||||| || || ||||| ||
Sbjct 244740 CTTCAGCCAAAAGATCGAGGCAAAG---CTGCCGCTGAAGAAGATTCCTTCCACGGCTGC 244796
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516
|||| | | | ||||||||||| || || | || | | ||||| || ||
Sbjct 244797 AAAGGCAATAATACGCTCGGCAAAGTTGGCC--GATTTCGAGGAT-ATCCAGGACAGGGC 244853
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576
||| |||||||| | | || | |||| || || | || || | || |||
Sbjct 244854 CCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAACAAGTAGTCGCG 244913
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
||| ||| ||| | ||||||||| ||||| | ||| |||| ||||| | |||
Sbjct 244914 CTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACGTT 244973
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|| ||||| ||||||||||| || |||||
Sbjct 244974 CTCCATGGCAATCTGGAAGCCGTAGAAGCA 245003
Score = 104 bits (114), Expect = 4e-16
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984
||| || ||||| ||||| || || || ||||||| ||||| | ||| || ||
Sbjct 244392 CTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAGGGATTCTT 244451
Query 793985 CGTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043
|| |||| ||| | ||| |||||| | ||||| || |||||||| |||||||
Sbjct 244452 AGTGTTGTAGATCTTACC-CACACCGAGCTCCATCAGCAGACGATCGGCGACAAATTCAA 244510
Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103
|||||||| |||||||| || ||||||||| || | |||||| | ||| |||
Sbjct 244511 TGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGA 244570
Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142
||||||| |||||| ||||| || || | |||||||
Sbjct 244571 GGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCT 244609
>seq65
Length=536665
Score = 111 bits (122), Expect = 2e-18
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 2035564 ACGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAAC 2035623
|||| ||| | |||||| |||| |||||||| | | || ||||||||||
Sbjct 82492 ACGAGAAGGGAACCGACAACATCATCTCGTGGGACTATGATTTCCTTAAGGTCGACCAGG 82433
Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683
||| ||||| ||| | || || |||||||| || || || |||||| | ||| ||
Sbjct 82432 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAATC 82373
Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743
|| |||||||||||||||||| | |||||||||||| | || ||||| || || |||
Sbjct 82372 TGACTTGCAAGACCGTGGCCAACATGATCAAGGGCAAGACTCCAGAGGAGATACGTCAGA 82313
Query 2035744 CCTTTAACATCAAG 2035757
| || ||||| |||
Sbjct 82312 CATTCAACATTAAG 82299
>seq1330
Length=3390
Score = 104 bits (114), Expect = 4e-16
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623
|| ||||||||||||||||| |||||||| | | ||| | |||| |||||
Sbjct 549 GAGAAGCGCACCGACGACATCATCTCGTGGGAC--GCCGATTTCCTTAAGGTAGACCAGG 492
Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683
||| ||||| ||| | ||||| |||||||| || || || || ||| | |||||
Sbjct 491 GCACACTCTTCGAGCTAATCCTGGCCGCCAATTATCTGGATATTAAGGGTTTGCTCGAAC 432
Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743
|| |||||||||||||| || | || ||||||||| | || ||||| || || ||||
Sbjct 431 TGACTTGCAAGACCGTGGCAAATATGATTAAGGGCAAGACCCCAGAGGAGATACGTAAGA 372
Query 2035744 CCTTTAACATCAA 2035756
| || ||||| ||
Sbjct 371 CTTTCAACATTAA 359
>seq268
Length=158303
Score = 93.3 bits (102), Expect = 7e-13
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGC--GAGGTCGACCAAC 2035623
|| ||||||||||||||||| |||||||| | | ||| | | || |||||
Sbjct 88587 GAGAAGCGCACCGACGACATCATCTCGTGGGAC--GCCGATTTCCTTAAAGTAGACCAGG 88530
Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683
||| ||||| ||| | || || |||||||| || || || |||||| | |||||
Sbjct 88529 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAAC 88470
Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743
|| ||||| |||||||| ||| | || ||||| ||| | || ||||| || || | |
Sbjct 88469 TGACTTGCAAAACCGTGGCAAACATGATTAAGGGGAAGACCCCAGAGGAGATACGTAGAA 88410
Query 2035744 CCTTTAACATCAAG 2035757
| || |||||||||
Sbjct 88409 CTTTCAACATCAAG 88396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916040565224465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |