Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq71 138 2e-26 seq358 132 8e-25 seq111 125 1e-22 seq65 111 2e-18 seq1330 104 4e-16 seq268 93.3 7e-13 >seq71 Length=537415 Score = 138 bits (152), Expect = 2e-26 Identities = 242/347 (70%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| || || ||| ||||||||||||| ||| ||||||||| ||| | || | || Sbjct 119987 GGGTCCTCCTGGCGTTGGCAAGACCACGACCATTCAGTGCCTGGCCCGCATCCTACTCGG 120046 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 | | | | ||||||||||| || || ||||| || ||||||||||| | || || Sbjct 120047 AGACAGCTACAAGGAGGCCGTGCTAGAGCTGAATGCCTCGAACGAGCGCGGCATCGATGT 120106 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCC 2019210 ||||| | | |||||| || | ||| | ||| ||||| || || | Sbjct 120107 GGTGCGAAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACGCTGCCCAAGGGTCGGC 120165 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 ||||| | | ||||| || ||||| ||| || | ||| || ||||||||||| || | Sbjct 120166 ACAAGATCGTTATCCTGGACGAGGCAGACAGCATGACGGAGGGCGCCCAGCAGGCGCTGC 120225 Query 2019271 GATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329 | ||| |||||||| | |||| ||||||||| ||||| || || ||||||||||| Sbjct 120226 G-TCGCACCATGGAGATCTACAGCAACACGACACGGTTCGCCCTAGCCTGCAACACCAGC 120284 Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 || | ||||||| || | ||| || |||||||| ||||||| Sbjct 120285 GAGAAGATCATCGAGCCCATACAGTCGCGATGCGCCATGCTGCGCTT 120331 >seq358 Length=123483 Score = 132 bits (146), Expect = 8e-25 Identities = 345/519 (66%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 2411461 TGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA-AAGGCAAAGATCTT 2411519 ||||||||||| |||||||| ||||| | | | || | |||| |||||||| Sbjct 19546 TGGATGCGCTTCTCGTAGCCCAATTGGGGCAGATACTT-CTCGGAGAAGGTGAAGATCTT 19488 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 |||||| ||| || || ||||| ||||| || | ||||| || |||||| || ||||| Sbjct 19487 GCGCTGATCGACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCCTCGTCCAGTGCCTG 19428 Query 2411580 CATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGGGC 2411639 || ||||||| || |||| |||| | || ||| || |||| || Sbjct 19427 CAGTCCTGGGTAGAGCAGACCCGAGAGCAGCGGATATTCCACCTGCTTAACGACCTCTGC 19368 Query 2411640 GGCGGCCTT--TTGCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGC 2411697 | | ||||| | || ||||| | ||||| || || || | | ||| || Sbjct 19367 GCCCGCCTTCCTGGCATCGTGCTGC--GTCACCACCGACGATAGCTTGTACACGTCCAGA 19310 Query 2411698 GTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGG 2411757 || || | | ||||||| |||||||| || || | || |||||||| Sbjct 19309 GTATACTCTTTGGACAGCTGGTAGTCGCTGCCCTTGACGAACTTCAGCTTCTCCAGCGGC 19250 Query 2411758 ACGCCAATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTC 2411816 || || ||| ||| |||||||||||||| | |||||| | || || |||| Sbjct 19249 ACTCCGATGGAGCTC-AGCATGGCCTTGATCACCTGCTCGTAGTACTGGGTGCGCAGCTC 19191 Query 2411817 GACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 2411876 | || |||||||| ||| ||||| || | ||| |||| || ||||| ||||| Sbjct 19190 CAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGCAGATCCGCAAACAGGAT 19131 Query 2411877 CCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC 2411936 ||||| || ||||||| || || || || | || | ||||||||||||||| | Sbjct 19130 GGTCACCTCGCAGCCGGCCTTCAGGAAATCTGCAATCTTCGACATGGGCACAAAGTAGGC 19071 Query 2411937 CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 | ||| ||||| ||||||| ||| |||||||| || || Sbjct 19070 GACATGTGGCTTTCCCGTCGTCGCCGTGCCCCAGTAGAT 19032 >seq111 Length=362587 Score = 125 bits (138), Expect = 1e-22 Identities = 228/330 (69%), Gaps = 9/330 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| ||| ||||| |||||| ||| || |||||||||||||| ||||| Sbjct 244680 ACCTTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 244739 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||| ||||||||||| |||| || ||||| ||| ||||| || || ||||| || Sbjct 244740 CTTCAGCCAAAAGATCGAGGCAAAG---CTGCCGCTGAAGAAGATTCCTTCCACGGCTGC 244796 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | | | ||||||||||| || || | || | | ||||| || || Sbjct 244797 AAAGGCAATAATACGCTCGGCAAAGTTGGCC--GATTTCGAGGAT-ATCCAGGACAGGGC 244853 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| |||||||| | | || | |||| || || | || || | || ||| Sbjct 244854 CCAGTCTGCCTTGCGCTTTACAGCCGGCATGGTCTCAACAGCATTGAACAAGTAGTCGCG 244913 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 ||| ||| ||| | ||||||||| ||||| | ||| |||| ||||| | ||| Sbjct 244914 CTCCTTCGGCTCCCGTATGTAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACGTT 244973 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||| ||||||||||| || ||||| Sbjct 244974 CTCCATGGCAATCTGGAAGCCGTAGAAGCA 245003 Score = 104 bits (114), Expect = 4e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 ||| || ||||| ||||| || || || ||||||| ||||| | ||| || || Sbjct 244392 CTCAAAGAAGTTTGTCTTTCCGTCCAGAGAGATCATATCCATGAAACTGAAGGGATTCTT 244451 Query 793985 CGTCAGGTAGTGCTTCTCGCAC-CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 || |||| ||| | ||| |||||| | ||||| || |||||||| ||||||| Sbjct 244452 AGTGTTGTAGATCTTACC-CACACCGAGCTCCATCAGCAGACGATCGGCGACAAATTCAA 244510 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 |||||||| |||||||| || ||||||||| || | |||||| | ||| ||| Sbjct 244511 TGTACTGGGACATGAGGACGCAGTTCATGCCAATCAAATTGCAGGGCAGGGCTTCGGTGA 244570 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||||| |||||| ||||| || || | ||||||| Sbjct 244571 GGAACTCTTGCTCGATTTCGACAGCATCCCTAATGATCT 244609 >seq65 Length=536665 Score = 111 bits (122), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 2035564 ACGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAAC 2035623 |||| ||| | |||||| |||| |||||||| | | || |||||||||| Sbjct 82492 ACGAGAAGGGAACCGACAACATCATCTCGTGGGACTATGATTTCCTTAAGGTCGACCAGG 82433 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| ||||| ||| | || || |||||||| || || || |||||| | ||| || Sbjct 82432 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCAATC 82373 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || |||||||||||||||||| | |||||||||||| | || ||||| || || ||| Sbjct 82372 TGACTTGCAAGACCGTGGCCAACATGATCAAGGGCAAGACTCCAGAGGAGATACGTCAGA 82313 Query 2035744 CCTTTAACATCAAG 2035757 | || ||||| ||| Sbjct 82312 CATTCAACATTAAG 82299 >seq1330 Length=3390 Score = 104 bits (114), Expect = 4e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || ||||||||||||||||| |||||||| | | ||| | |||| ||||| Sbjct 549 GAGAAGCGCACCGACGACATCATCTCGTGGGAC--GCCGATTTCCTTAAGGTAGACCAGG 492 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| ||||| ||| | ||||| |||||||| || || || || ||| | ||||| Sbjct 491 GCACACTCTTCGAGCTAATCCTGGCCGCCAATTATCTGGATATTAAGGGTTTGCTCGAAC 432 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || |||||||||||||| || | || ||||||||| | || ||||| || || |||| Sbjct 431 TGACTTGCAAGACCGTGGCAAATATGATTAAGGGCAAGACCCCAGAGGAGATACGTAAGA 372 Query 2035744 CCTTTAACATCAA 2035756 | || ||||| || Sbjct 371 CTTTCAACATTAA 359 >seq268 Length=158303 Score = 93.3 bits (102), Expect = 7e-13 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGC--GAGGTCGACCAAC 2035623 || ||||||||||||||||| |||||||| | | ||| | | || ||||| Sbjct 88587 GAGAAGCGCACCGACGACATCATCTCGTGGGAC--GCCGATTTCCTTAAAGTAGACCAGG 88530 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| ||||| ||| | || || |||||||| || || || |||||| | ||||| Sbjct 88529 GCACACTCTTCGAGCTAATACTGGCCGCCAATTATCTGGATATCAAGGGTTTGCTCGAAC 88470 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || ||||| |||||||| ||| | || ||||| ||| | || ||||| || || | | Sbjct 88469 TGACTTGCAAAACCGTGGCAAACATGATTAAGGGGAAGACCCCAGAGGAGATACGTAGAA 88410 Query 2035744 CCTTTAACATCAAG 2035757 | || ||||||||| Sbjct 88409 CTTTCAACATCAAG 88396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916040565224465