Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq234 134 9e-27 seq6 129 4e-25 seq35 113 3e-20 seq23 109 4e-19 >seq234 Length=227530 Score = 134 bits (148), Expect = 9e-27 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 || ||| |||| || | |||| |||||||||||||||||| || ||||| | || | Sbjct 9920 CCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCC 9979 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| ||| || || |||||||||| ||||| || ||| | || | || || || Sbjct 9980 ATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTT 10039 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 ||| | || || |||||| | | || | || | ||||| |||| ||||| Sbjct 10040 GTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTAT 10099 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| ||||| |||||||||||||||||||||||| Sbjct 10100 GGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATG 10136 >seq6 Length=3104374 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 2898465 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 2898406 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 2898405 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 2898346 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| || |||||| || | ||| |||| Sbjct 2898345 TGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 2898288 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||| || || ||||| || ||||| Sbjct 2898287 TCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 >seq35 Length=832945 Score = 113 bits (124), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || | | || | || ||||| ||||| |||||||| Sbjct 774142 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 774201 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | ||||||||||| | || || ||||| | Sbjct 774202 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 774259 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || |||||| || | |||||||||||| || || |||||||| Sbjct 774260 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTC 774319 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 774320 ACGAAGATCTGCATG 774334 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || | | || | || ||||| ||||| ||||| || Sbjct 773458 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAA 773517 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| ||| | || | ||||||||||| | || || ||||| | Sbjct 773518 GATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 773575 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || |||||| || | ||| |||||||| || || |||||||| Sbjct 773576 TTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 773635 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 773636 ACGAAGATCTGCATG 773650 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || | | || | || ||||| ||||| |||||||| Sbjct 773686 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773745 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | ||||||||||| | || || ||||| | Sbjct 773746 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 773803 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || |||||| || | ||| |||||||| || || |||||||| Sbjct 773804 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 773863 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 773864 ACGAAGATCTGCATG 773878 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || | | || | || ||||| ||||| |||||||| Sbjct 773914 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773973 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||| ||| | || | ||||||||||| | || || ||||| | Sbjct 773974 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 774031 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || || |||||| || | ||| |||||||| || || |||||||| Sbjct 774032 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 774091 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 774092 ACGAAGATCTGCATG 774106 >seq23 Length=1278451 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1263421 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263480 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||||||| | || | ||||||||||| Sbjct 1263481 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263540 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || || | ||| ||||| Sbjct 1263541 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1263600 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 1263601 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1263649 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263708 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||||||| | || | ||||||||||| Sbjct 1263709 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263768 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || || | ||| ||||| Sbjct 1263769 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1263828 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 1263829 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1263877 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263936 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||||||| | || | ||||||||||| Sbjct 1263937 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263996 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || || | ||| ||||| Sbjct 1263997 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1264056 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| |||||||||||||| Sbjct 1264057 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || |||| ||||| ||||| |||||||| Sbjct 1263214 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAA 1263273 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||||||| | || | ||||||||||| | || || || ||| Sbjct 1263274 GATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1263333 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | ||| ||||| || || || || ||||| || Sbjct 1263334 CTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCAC 1263393 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 1263394 AAAGATCTGCAT 1263405 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| || | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 1264105 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1264164 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||||||| | || | ||||||||||| Sbjct 1264165 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1264224 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || || | ||| ||||| Sbjct 1264225 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGT 1264284 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| || |||||||||||||| Sbjct 1264285 TTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685119247765