Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq234 134 9e-27
seq6 129 4e-25
seq35 113 3e-20
seq23 109 4e-19
>seq234
Length=227530
Score = 134 bits (148), Expect = 9e-27
Identities = 160/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
|| ||| |||| || | |||| |||||||||||||||||| || ||||| | || |
Sbjct 9920 CCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCC 9979
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
||| |||| ||| || || |||||||||| ||||| || ||| | || | || || ||
Sbjct 9980 ATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTT 10039
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941
||| | || || |||||| | | || | || | ||||| |||| |||||
Sbjct 10040 GTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTAT 10099
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|||||| ||||| ||||||||||||||||||||||||
Sbjct 10100 GGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCATG 10136
>seq6
Length=3104374
Score = 129 bits (142), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 2898465 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 2898406
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| |||||||||||||| || ||||| ||| | || | |||||||||||
Sbjct 2898405 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 2898346
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || ||||| || || || | ||| || |||||| || | ||| ||||
Sbjct 2898345 TGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGG 2898288
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| || ||||| || || ||||| || |||||
Sbjct 2898287 TCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
>seq35
Length=832945
Score = 113 bits (124), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || | | || | || ||||| ||||| ||||||||
Sbjct 774142 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 774201
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||| || ||||| ||| | || | ||||||||||| | || || ||||| |
Sbjct 774202 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 774259
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || || |||||| || | |||||||||||| || || ||||||||
Sbjct 774260 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATGGTCTTGCCAGTCAGGGTCTTC 774319
Query 34964 ACAAAGATCTGCATG 34978
|| ||||||||||||
Sbjct 774320 ACGAAGATCTGCATG 774334
Score = 107 bits (118), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || | | || | || ||||| ||||| ||||| ||
Sbjct 773458 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAA 773517
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| ||| | || | ||||||||||| | || || ||||| |
Sbjct 773518 GATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 773575
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || || |||||| || | ||| |||||||| || || ||||||||
Sbjct 773576 TTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 773635
Query 34964 ACAAAGATCTGCATG 34978
|| ||||||||||||
Sbjct 773636 ACGAAGATCTGCATG 773650
Score = 107 bits (118), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || | | || | || ||||| ||||| ||||||||
Sbjct 773686 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773745
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||| || ||||| ||| | || | ||||||||||| | || || ||||| |
Sbjct 773746 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 773803
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || || |||||| || | ||| |||||||| || || ||||||||
Sbjct 773804 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 773863
Query 34964 ACAAAGATCTGCATG 34978
|| ||||||||||||
Sbjct 773864 ACGAAGATCTGCATG 773878
Score = 107 bits (118), Expect = 1e-18
Identities = 142/195 (73%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || | | || | || ||||| ||||| ||||||||
Sbjct 773914 CTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAA 773973
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
|||| || ||||| ||| | || | ||||||||||| | || || ||||| |
Sbjct 773974 AATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGAC--A 774031
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || || |||||| || | ||| |||||||| || || ||||||||
Sbjct 774032 TTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 774091
Query 34964 ACAAAGATCTGCATG 34978
|| ||||||||||||
Sbjct 774092 ACGAAGATCTGCATG 774106
>seq23
Length=1278451
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| || | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 1263421 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263480
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| ||||||||||| || || ||||||||| | || | |||||||||||
Sbjct 1263481 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263540
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | ||| || || | ||| |||||
Sbjct 1263541 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1263600
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||||||||||||
Sbjct 1263601 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| || | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 1263649 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263708
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| ||||||||||| || || ||||||||| | || | |||||||||||
Sbjct 1263709 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263768
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | ||| || || | ||| |||||
Sbjct 1263769 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1263828
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||||||||||||
Sbjct 1263829 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| || | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 1263877 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1263936
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| ||||||||||| || || ||||||||| | || | |||||||||||
Sbjct 1263937 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1263996
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | ||| || || | ||| |||||
Sbjct 1263997 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGT 1264056
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||||||||||||
Sbjct 1264057 TTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || | || |||| ||||| ||||| ||||||||
Sbjct 1263214 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAA 1263273
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || || ||||||||| | || | ||||||||||| | || || || |||
Sbjct 1263274 GATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1263333
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | ||| || || | ||| ||||| || || || || ||||| ||
Sbjct 1263334 CTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCAC 1263393
Query 34966 AAAGATCTGCAT 34977
||||||||||||
Sbjct 1263394 AAAGATCTGCAT 1263405
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| || | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 1264105 CAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATC 1264164
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| ||||||||||| || || ||||||||| | || | |||||||||||
Sbjct 1264165 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 1264224
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || || ||| | || | || | ||| || || | ||| |||||
Sbjct 1264225 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGT 1264284
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | ||| || ||||||||||||||
Sbjct 1264285 TTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325685119247765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |