Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq22 217 7e-52 seq8 208 4e-49 >seq22 Length=1073832 Score = 217 bits (240), Expect = 7e-52 Identities = 471/701 (67%), Gaps = 13/701 (2%) Strand=Plus/Minus Query 66338 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66397 || || |||||||| || ||| | | || || ||| | || || || || | ||| Sbjct 841131 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTTTGCCG 841072 Query 66398 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66457 | ||||| ||| | |||||||||||||| ||| ||| || || | || ||| || Sbjct 841071 CGTGGCCGTGTGATTGAAATCTACGGCCCTGAAAGTTCGGGTAAAACCACGCTGGCCCTG 841012 Query 66458 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66517 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 841011 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 840952 Query 66518 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66577 |||| ||||| | |||||||| ||| || || || | || ||||| || | Sbjct 840951 GCCCTTGACCCCGGTTACGCCAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 840892 Query 66578 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66637 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 840891 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 840834 Query 66638 CTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAG 66695 || || || | || || || ||||||||| || || || ||||||||||| || | Sbjct 840833 CTATCGATGTGCTGGTAGTGGATAGTGTGGCGGCTCTTGTACCCCGCGCCGAGCTTGAGG 840774 Query 66696 GCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCA 66755 |||| || || ||||| || ||||| ||||| || || |||||| |||||| |||||| Sbjct 840773 GCGATATGGGCGACAGCCATGTCGGTCTGCATGCCCGTCTCATGAGTCAGGCCCTGCGCA 840714 Query 66756 AGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCG 66815 |||| ||||| | | | || | ||||| ||| | ||| | |||||| | || Sbjct 840713 AGCTGACCGGGTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATTCGTC 840654 Query 66816 AGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGCAAGGCTT 66872 ||| || || |||| | ||| |||| || || ||||| ||||| || || Sbjct 840653 TGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACCACCGGCGGGAATGCCC 840600 Query 66873 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66932 ||| || || || || || || ||||| | || || |||| || ||||| | Sbjct 840599 TGAAATTTTATGCTTCCGTGCGGCTGGATATTCGCCGTATCGGGTCCATCAAGGACAAGG 840540 Query 66933 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 66992 | || | || ||||||| ||||| || || || || ||||||||| ||||||||||| Sbjct 840539 ACGAAGTGGTTGGCAACCAGACCCGCGTCAAAGTGGTAAAGAACAAGATGGCCCCGCCGT 840480 Query 66993 ACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 67033 | | | | |||||| | || |||| || || || ||| Sbjct 840479 TCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 840439 >seq8 Length=1553183 Score = 208 bits (230), Expect = 4e-49 Identities = 470/705 (67%), Gaps = 21/705 (3%) Strand=Plus/Plus Query 66338 GACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCG 66397 || || |||||||| || ||| | | || || ||| | || || || || ||| Sbjct 1134788 GATGTGATTCCCACAGGGTCTCTGGGGCTTGATATCGCGTTAGGGATTGGCGGTCTGCCG 1134847 Query 66398 AGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTC 66457 | ||||| ||| | |||||||||||||| ||| ||||| || | || ||| || Sbjct 1134848 CGTGGCCGTGTGATTGAAATCTACGGCCCGGAAAGCTCAGGTAAAACCACGCTGGCCCTG 1134907 Query 66458 CACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCAC 66517 || || | || | || |||||| || |||| | |||| || || ||||| || Sbjct 1134908 CATGCCATTGCAGAAGCCCAGAAGCGGGGCGGCACCTGTGCCTTTATTGATGCTGAACAT 1134967 Query 66518 TCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTT 66577 | || ||||| | ||||| || ||| || || || | || ||||| || | Sbjct 1134968 GCTCTTGACCCCGGTTACGCTAAAAAGCTGGGCGTTGATGTTGATAACCTGCTGATCAGC 1135027 Query 66578 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66637 ||||| || ||||||| ||||| ||||| |||| ||| || || ||||||| Sbjct 1135028 CAGCCAGATGCTGGCGAACAGGCTCTGGAAATCGCTGATACGCTGGTGCGCTCTGGCG-- 1135085 Query 66638 CTGTCCATCG------TCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTC 66691 |||||| | || || || |||||||||||| ||||| ||||||||||| Sbjct 1135086 ----CCATCGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCCCGCGCCGAGCTT 1135141 Query 66692 GAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATG 66751 || ||||| || || ||||| || ||||| |||||||| || || ||| |||||| || Sbjct 1135142 GAGGGCGATATGGGCGACAGCCATGTCGGTCTGCACGCCCGTCTGATGAGTCAGGCCTTG 1135201 Query 66752 CGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 66811 |||||||| ||||| | | | || | ||||| ||| | ||| | |||||| | Sbjct 1135202 CGCAAGCTGACCGGTTCTGTTGCGCGCTCTAACACCATGATGATCTTCCTGAACCAGATT 1135261 Query 66812 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGCAAG 66868 || ||| || || |||| | ||| |||| || || || || ||||| || Sbjct 1135262 CGTCTGAAAATTGG---CGTGATGTTCGG---GAATCCGGAAACAACTACCGGCGGGAAC 1135315 Query 66869 GCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAA 66928 || ||| ||| || || || || || ||||| | ||||| |||| || ||||| Sbjct 1135316 GCCCTGAAGTTTTATGCTTCCGTGCGGCTGGATATTCGTCGTATCGGGTCCATCAAGGAC 1135375 Query 66929 GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCG 66988 || || | || || |||| ||||| || || || || ||||||||| |||||||| Sbjct 1135376 AAGGACGAAGTGGTTGGTAACCAGACCCGCGTCAAAGTGGTGAAGAACAAGATGGCCCCG 1135435 Query 66989 CCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 67033 ||| | | | | |||||| | || |||| || || || ||| Sbjct 1135436 CCGTTCAGGCAGGTTGAGTTCGACATCATGTATGGCGAAGGGATC 1135480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244103043227940