Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq234 149 5e-31 seq23 107 1e-18 seq35 96.9 3e-15 >seq234 Length=227530 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||||||| | ||||| || || |||||||||||||| | | || || | Sbjct 9921 CGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCA 9980 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||||||||| | ||||| | ||| ||||| || ||||| || |||||| Sbjct 9981 TCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTG 10040 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | || || || |||| || ||||||||||| Sbjct 10041 TCCTG-AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTAT 10099 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || ||||| |||||||| Sbjct 10100 GGTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq23 Length=1278451 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| || ||||| || || || ||||| || || | || || || Sbjct 1264102 ACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1264161 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||| || || || || ||||| || Sbjct 1264162 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 1264221 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || | || || || | || || Sbjct 1264222 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGAT 1264281 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||| |||||||| ||||| ||||||||||| Sbjct 1264282 GGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1264320 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| || ||||| || || || ||||| || || | || || || Sbjct 1263418 ACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1263477 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||| || || || || ||||| || Sbjct 1263478 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 1263537 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || | || || || || || || Sbjct 1263538 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGAT 1263597 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || ||||| |||||||| Sbjct 1263598 GGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| || ||||| || || || ||||| || || | || || || Sbjct 1263646 ACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1263705 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||| || || || || ||||| || Sbjct 1263706 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 1263765 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || | || || || || || || Sbjct 1263766 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGAT 1263825 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || ||||| |||||||| Sbjct 1263826 GGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| || ||||| || || || ||||| || || | || || || Sbjct 1263874 ACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1263933 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||| || || || || ||||| || Sbjct 1263934 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 1263993 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || | || || || || || || Sbjct 1263994 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGAT 1264053 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || ||||| |||||||| Sbjct 1264054 GGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| || || || || || || ||||| || || | || || || Sbjct 1263190 ACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCC 1263249 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | | ||||| || || || || ||||| || Sbjct 1263250 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 1263309 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || | || || || || || || Sbjct 1263310 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGAT 1263369 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | || || ||||| |||||||| Sbjct 1263370 GGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405 >seq35 Length=832945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| | || || || || || ||||| || || | | || || Sbjct 774119 CGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 774178 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | ||||| | |||||||| || ||||| ||||| ||| Sbjct 774179 TCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 774238 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| || | || || || || ||||| Sbjct 774239 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTTATG 774298 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| | ||| || || || |||||||| || Sbjct 774299 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 774336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| | || || || || || ||||| || || | | || || Sbjct 773663 CGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773722 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | ||||| | |||||||| || ||||| ||||| ||| Sbjct 773723 TCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 773782 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| || | || || || || || || Sbjct 773783 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATG 773842 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || || || |||||||| Sbjct 773843 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| | || || || || || ||||| || || | | || || Sbjct 773891 CGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773950 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | ||||| | |||||||| || ||||| ||||| ||| Sbjct 773951 TCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 774010 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | ||||| || | || || || || || || Sbjct 774011 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATG 774070 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || || || |||||||| Sbjct 774071 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 774105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210115447835