Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq14 161 7e-34
seq224 111 1e-18
seq131 111 1e-18
seq8 111 1e-18
seq1429 87.8 1e-11
seq1427 87.8 1e-11
seq36 87.8 1e-11
>seq14
Length=1523015
Score = 161 bits (178), Expect = 7e-34
Identities = 558/866 (64%), Gaps = 6/866 (1%)
Strand=Plus/Plus
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
|||| | || ||||||| |||||||| ||||| | | || || || || || || |
Sbjct 1235795 AATCGGTACCCTCGAACAGAGAATCAATCTCAATGCTGGCCTGGGTGGACGAGGAGAGGG 1235854
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135
||| || || || || || || || | || | || | || ||| ||| | |
Sbjct 1235855 TACGCTTTGCGCGCTCGCAGGCGGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGT 1235912
Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195
|| ||| | || | || | |||||| || | ||| | || || ||||| || ||
Sbjct 1235913 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGGGTCACTAGACGGTTGTC 1235972
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||||| ||||| || | | |||| || | ||||| | | || | ||| | || ||
Sbjct 1235973 GAAATCCTCACCACCAAGATGGGTATCACCGGCCGTAGATTTGACCTCGAAGATGCCGTC 1236032
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|| | |||| || | ||||| ||| || ||||||| ||| ||||| || |||||
Sbjct 1236033 ATCGATCGACAGAATGGACACATCGAAGGTACCGCCACCCAGATCGAAAATGAGCACATT 1236092
Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375
|| | || || || || ||||| || | |||||| || || || || ||
Sbjct 1236093 ACGCTCACCAACAGCCTTCTTGTCCAGGCCATAGGCGATAGCAGCGGCCGTCGGCTCGTT 1236152
Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435
|| || | || ||||| | || ||||| | || || || || || || || | ||
Sbjct 1236153 GATGATACGCAGCACATTCAATCCGGCAATGGTACCGGCGTCCTTGGTCGCCTGACGCTG 1236212
Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495
|| ||||| || || || || ||||| || ||||||| || || || || | ||
Sbjct 1236213 CGAGTCGTTGAAGTAGGCTGGCACAGTGATGACGGCATTGGTCACCGTCTTGCCCAGGTA 1236272
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | |||||||| | || | ||| || || || | || || ||| |
Sbjct 1236273 CGCCTCGGCGGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCCTCGGG-GAAGA 1236331
Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
| ||| |||| | || | || |||| | || || | | ||| | | |
Sbjct 1236332 AGGTCTTCTTCTCATCCTTGTACGTAACCTCAATCTTGGGCTTGCCATCTACACTGACCA 1236391
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| | || ||||| | ||||| || || || ||| || | ||| | | ||| |
Sbjct 1236392 CGTCGAAGGGCCAGTGCTTCATGTCAGACTGCACAGCAGAATCCTCAAACTTGCGACCGA 1236451
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || || || | ||||| || | || | || | ||||| |
Sbjct 1236452 TCAGACGCTTGGCATCGAAGATCGTTTGAGTTGGGTTCATCGCCACCTGGTTCTTGGCGG 1236511
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
|||| ||||||| | | || || || || || | |||||| ||||| || || |||||||
Sbjct 1236512 CATCACCAATCAAACGCTCCGTGTCCGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 1236571
Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854
| || || || ||||| || || || || |||| || | ||||| || ||| | |
Sbjct 1236572 CCTGGTCGTTGGCAATGATCTCGACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 1236631
Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880
|||| || ||||||||||||| ||||
Sbjct 1236632 TTGTGCCCAAATCAATACCAACAGCA 1236657
>seq224
Length=190040
Score = 111 bits (122), Expect = 1e-18
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| |||||||| |||||||| ||||| || | || || | ||| ||||||
Sbjct 57656 CCATAGGCAAGGGCAGCAGCGGTTGGTTCGTTAATGATACGCAGCACTTCAAGGCCAGCA 57715
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| | || ||||| || || || || | || | ||||||||| || || |||||||||
Sbjct 57716 ATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACAGTA 57775
Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523
|| ||||| | || |||| || |||| ||||| || |||| ||||| ||||
Sbjct 57776 ATGACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCAGTTTCCTTCATCTTACCC 57835
Query 282524 AAAA 282527
||||
Sbjct 57836 AAAA 57839
>seq131
Length=332952
Score = 111 bits (122), Expect = 1e-18
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 637113 AAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACA 637172
|||| | || | || |||| ||||| || ||||| || || | |||||| |||| ||
Sbjct 235438 AAAGCGAGTTTTGGTGGATTTCTCTTCACCTAATATAGCCAAGCAGATGCATGTTGGTCA 235379
Query 637173 TTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGA-CACG 637231
|| | || || |||||||| ||||| ||||| | | ||||| | | || | ||||
Sbjct 235378 CCTACGCTCTACCATTATTGGCGAATCAATTTGCCGCTTGCTAGAATTTT-TGAAGCACG 235320
Query 637232 ATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289
|||| |||||| |||||| | ||||||||||| || ||||| ||||||||||||||
Sbjct 235319 ATGTGATTCGTATAAATCATCTTGGTGATTGGGGCACACAATTTGGTATGTTAATTGC 235262
>seq8
Length=1553183
Score = 111 bits (122), Expect = 1e-18
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| |||||||| |||||||| ||||| || | || || | ||| ||||||
Sbjct 763362 CCATAGGCAAGGGCAGCAGCGGTTGGTTCGTTAATGATACGCAGCACTTCAAGGCCAGCA 763421
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| | || ||||| || || || || | || | ||||||||| || || |||||||||
Sbjct 763422 ATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACAGTA 763481
Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523
|| ||||| | || |||| || |||| ||||| || |||| ||||| ||||
Sbjct 763482 ATGACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCAGTTTCCTTCATCTTACCC 763541
Query 282524 AAAA 282527
||||
Sbjct 763542 AAAA 763545
>seq1429
Length=2652
Score = 87.8 bits (96), Expect = 1e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 282249
|| ||||| || || || ||||| | || | ||| | || || | || | ||| ||
Sbjct 512 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 571
Query 282250 --TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
||| || || | | || || || ||||| ||| || ||||||| ||| || ||
Sbjct 572 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 631
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| ||||| ||| | | || || || || ||||| || | |||||| || |||
Sbjct 632 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 691
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | || || || || || ||||| ||| ||||||||||||||
Sbjct 692 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 751
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|| | || || ||||| || || || || || || || || || ||
Sbjct 752 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 798
>seq1427
Length=2652
Score = 87.8 bits (96), Expect = 1e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 282249
|| ||||| || || || ||||| | || | ||| | || || | || | ||| ||
Sbjct 512 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 571
Query 282250 --TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
||| || || | | || || || ||||| ||| || ||||||| ||| || ||
Sbjct 572 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 631
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| ||||| ||| | | || || || || ||||| || | |||||| || |||
Sbjct 632 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 691
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | || || || || || ||||| ||| ||||||||||||||
Sbjct 692 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 751
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|| | || || ||||| || || || || || || || || || ||
Sbjct 752 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 798
>seq36
Length=774725
Score = 87.8 bits (96), Expect = 1e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 282249
|| ||||| || || || ||||| | || | ||| | || || | || | ||| ||
Sbjct 638943 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 639002
Query 282250 --TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
||| || || | | || || || ||||| ||| || ||||||| ||| || ||
Sbjct 639003 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 639062
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| ||||| ||| | | || || || || ||||| || | |||||| || |||
Sbjct 639063 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 639122
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | || || || || || ||||| ||| ||||||||||||||
Sbjct 639123 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 639182
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|| | || || ||||| || || || || || || || || || ||
Sbjct 639183 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 639229
Score = 87.8 bits (96), Expect = 1e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG- 282249
|| ||||| || || || ||||| | || | ||| | || || | || | ||| ||
Sbjct 641824 TTGTCAAAGTCCTCGCCACCCAAGTGGGTGTCTCCGGCAGTGGCGCGCACCTCGAACAGC 641765
Query 282250 --TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
||| || || | | || || || ||||| ||| || ||||||| ||| || ||
Sbjct 641764 GATCCCTCGTCGATGGTCAGAATAGAGACATCGAAGGTGCCGCCACCCAGATCGAAGATC 641705
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| ||||| ||| | | || || || || ||||| || | |||||| || |||
Sbjct 641704 AGCACATTGCGCTCTCCCTTGAGATTCTTGTCCAGGCCATAGGCCAGAGCAGCCGCCGTT 641645
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
|| || || || || | || || || || || ||||| ||| ||||||||||||||
Sbjct 641644 GGCTCGTTGATGATGCGCAGCACGTTGAGGCCGGCAATGGCTCCAGCATCTTTAGTGGCC 641585
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
|| | || || ||||| || || || || || || || || || ||
Sbjct 641584 TGGCGCTGGGAGTCGTTGAAGTACGCTGGCACTGTGATGACTGCGTC 641538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740535399677310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |