Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq15 168 2e-36 seq73 150 6e-31 >seq15 Length=1383265 Score = 168 bits (186), Expect = 2e-36 Identities = 302/441 (68%), Gaps = 0/441 (0%) Strand=Plus/Minus Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816 |||||| || ||||| | ||||||||||||| |||||||| || | |||| || || Sbjct 377976 AAAATCCAACATTCTTCTGATTGGCCCTACTGGGTCAGGTAAGACGCTGCTTGCGCAGAC 377917 Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876 | || ||| | | || || | | || | || || || | || || ||||| Sbjct 377916 GCTTGCCCGTATTCTTGACGTGCCGTTTACCATGGCCGACGCCACGACGTTGACTGAAGC 377857 Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936 ||| || || || |||||||| |||||| | | || || | || || | || || Sbjct 377856 TGGCTACGTTGGGGAAGATGTTGAAAACATTATCCTGAAGTTGCTTCAGGCGTCAGACTA 377797 Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996 | || | ||| ||| | || || || || |||||||| ||| | ||||||||| | | Sbjct 377796 CAATGTGGAACGGGCGCAGCGCGGTATCGTCTATATCGACGAAATCGATAAAATTTCCCG 377737 Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056 || || || | | ||||| || || ||||| ||| ||||| |||||||| || || Sbjct 377736 TAAGTCTGATAATCCCTCCATCACGCGTGATGTCAGTGGTGAAGGTGTACAGCAGGCATT 377677 Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116 | ||| | || ||||| || ||||| |||||||| |||||||| |||||||| || Sbjct 377676 GCTGAAACTGATGGAAGGCACGGTTGCTTCTGTTCCTCCGCAAGGTGGGCGTAAACATCC 377617 Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176 || || ||| | ||| | | ||||| || ||||| ||||||| || || ||||| Sbjct 377616 GCAGCAGGAATTCCTTCAGGTCGATACCACCAATATGCTGTTTATCTGCGGCGGTGCGTT 377557 Query 189177 TGATGGTCTTGAAAACATTAT 189197 || || | || || ||||| Sbjct 377556 TGCCGGGTTGGATAAGATTAT 377536 >seq73 Length=471550 Score = 150 bits (166), Expect = 6e-31 Identities = 298/441 (68%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816 |||||| || ||||| | ||||||||||||| |||||||| || | |||| || || Sbjct 194732 AAAATCCAACATTCTTCTGATTGGCCCTACTGGGTCAGGTAAGACGCTGCTTGCGCAGAC 194791 Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876 | || ||| | | || || | | || | || || || | || || ||||| Sbjct 194792 GCTTGCCCGTATTCTTGACGTGCCGTTTACCATGGCCGACGCCACGACGTTGACTGAAGC 194851 Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936 ||| || || || |||||||| |||||| | | || || | || || | || || Sbjct 194852 TGGCTACGTTGGGGAAGATGTTGAAAACATTATCCTGAAGTTGCTTCAGGCGTCAGACTA 194911 Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996 | || | ||| ||| | || || || || |||||||| ||| | ||||||||| | | Sbjct 194912 CAATGTGGAACGGGCGCAGCGCGGTATCGTCTATATCGACGAAATCGATAAAATTTCCCG 194971 Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056 ||||| || | | ||||| || || ||||| ||| ||||| || ||||| || | Sbjct 194972 TAAATCTGATAATCCTTCCATCACGCGTGATGTGAGTGGTGAAGGTGTGCAGCAGGCACT 195031 Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116 | ||| | || ||||| || ||||| ||||| || || ||||| || ||||| || Sbjct 195032 GCTGAAACTGATGGAAGGCACGGTTGCTTCCGTTCCGCCACAGGGTGGGCGCAAACATCC 195091 Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176 || || ||| | ||| | | ||||| || ||||| |||| ||| || || ||||| Sbjct 195092 GCAGCAGGAATTCCTTCAGGTCGATACCACCAATATGCTGTTCATTTGCGGCGGTGCGTT 195151 Query 189177 TGATGGTCTTGAAAACATTAT 189197 || || || || || || || Sbjct 195152 TGCCGGGCTGGACAAGATCAT 195172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591870933058880