Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq15 168 2e-36
seq73 150 6e-31
>seq15
Length=1383265
Score = 168 bits (186), Expect = 2e-36
Identities = 302/441 (68%), Gaps = 0/441 (0%)
Strand=Plus/Minus
Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816
|||||| || ||||| | ||||||||||||| |||||||| || | |||| || ||
Sbjct 377976 AAAATCCAACATTCTTCTGATTGGCCCTACTGGGTCAGGTAAGACGCTGCTTGCGCAGAC 377917
Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876
| || ||| | | || || | | || | || || || | || || |||||
Sbjct 377916 GCTTGCCCGTATTCTTGACGTGCCGTTTACCATGGCCGACGCCACGACGTTGACTGAAGC 377857
Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936
||| || || || |||||||| |||||| | | || || | || || | || ||
Sbjct 377856 TGGCTACGTTGGGGAAGATGTTGAAAACATTATCCTGAAGTTGCTTCAGGCGTCAGACTA 377797
Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996
| || | ||| ||| | || || || || |||||||| ||| | ||||||||| | |
Sbjct 377796 CAATGTGGAACGGGCGCAGCGCGGTATCGTCTATATCGACGAAATCGATAAAATTTCCCG 377737
Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056
|| || || | | ||||| || || ||||| ||| ||||| |||||||| || ||
Sbjct 377736 TAAGTCTGATAATCCCTCCATCACGCGTGATGTCAGTGGTGAAGGTGTACAGCAGGCATT 377677
Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116
| ||| | || ||||| || ||||| |||||||| |||||||| |||||||| ||
Sbjct 377676 GCTGAAACTGATGGAAGGCACGGTTGCTTCTGTTCCTCCGCAAGGTGGGCGTAAACATCC 377617
Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176
|| || ||| | ||| | | ||||| || ||||| ||||||| || || |||||
Sbjct 377616 GCAGCAGGAATTCCTTCAGGTCGATACCACCAATATGCTGTTTATCTGCGGCGGTGCGTT 377557
Query 189177 TGATGGTCTTGAAAACATTAT 189197
|| || | || || |||||
Sbjct 377556 TGCCGGGTTGGATAAGATTAT 377536
>seq73
Length=471550
Score = 150 bits (166), Expect = 6e-31
Identities = 298/441 (68%), Gaps = 0/441 (0%)
Strand=Plus/Plus
Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816
|||||| || ||||| | ||||||||||||| |||||||| || | |||| || ||
Sbjct 194732 AAAATCCAACATTCTTCTGATTGGCCCTACTGGGTCAGGTAAGACGCTGCTTGCGCAGAC 194791
Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876
| || ||| | | || || | | || | || || || | || || |||||
Sbjct 194792 GCTTGCCCGTATTCTTGACGTGCCGTTTACCATGGCCGACGCCACGACGTTGACTGAAGC 194851
Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936
||| || || || |||||||| |||||| | | || || | || || | || ||
Sbjct 194852 TGGCTACGTTGGGGAAGATGTTGAAAACATTATCCTGAAGTTGCTTCAGGCGTCAGACTA 194911
Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996
| || | ||| ||| | || || || || |||||||| ||| | ||||||||| | |
Sbjct 194912 CAATGTGGAACGGGCGCAGCGCGGTATCGTCTATATCGACGAAATCGATAAAATTTCCCG 194971
Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056
||||| || | | ||||| || || ||||| ||| ||||| || ||||| || |
Sbjct 194972 TAAATCTGATAATCCTTCCATCACGCGTGATGTGAGTGGTGAAGGTGTGCAGCAGGCACT 195031
Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116
| ||| | || ||||| || ||||| ||||| || || ||||| || ||||| ||
Sbjct 195032 GCTGAAACTGATGGAAGGCACGGTTGCTTCCGTTCCGCCACAGGGTGGGCGCAAACATCC 195091
Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176
|| || ||| | ||| | | ||||| || ||||| |||| ||| || || |||||
Sbjct 195092 GCAGCAGGAATTCCTTCAGGTCGATACCACCAATATGCTGTTCATTTGCGGCGGTGCGTT 195151
Query 189177 TGATGGTCTTGAAAACATTAT 189197
|| || || || || || ||
Sbjct 195152 TGCCGGGCTGGACAAGATCAT 195172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591870933058880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |