Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq234 185 2e-41
seq252 89.7 1e-12
>seq234
Length=227530
Score = 185 bits (204), Expect = 2e-41
Identities = 170/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || || |||| || || || ||||| || |||||||||||||| ||| ||
Sbjct 9921 CGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCA 9980
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| | |||||| ||||| ||||| | | ||||||||||||||| |||||||| ||
Sbjct 9981 TCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTG 10040
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| ||||| |||||||| || ||||| ||||| || || | ||||||
Sbjct 10041 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATG 10100
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||||||||| ||||||||
Sbjct 10101 GTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135
>seq252
Length=176535
Score = 89.7 bits (98), Expect = 1e-12
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429
|||| || || ||||| | ||| | | ||||||||||| || |||||||| || ||||
Sbjct 29797 GAGAGGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCCAAGAAGATACTCGAGTGGA 29856
Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTA 198488
| || |||||| | || | |||| | | ||| || ||| | |||||| |||
Sbjct 29857 CGGCCACGCCGGAACAGGCGCTCGAGTACTCGATTCT-GCTCAACGACAAGTACAGTCTA 29915
Query 198489 GACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGAT 198548
||||| ||||| ||||| || || || || |||||||| ||| | || |||| ||
Sbjct 29916 GACGGGCGCGATCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGGGGCATACACGAC 29975
Query 198549 CGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTAT 198599
| ||||| || | | |||||||| ||||| | || ||||| |||
Sbjct 29976 ATGGGCTGGAAGGAGCGTGCGATATTTGGAAAGATTCGCTACATGAACTAT 30026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981802858355965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |