Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq234 185 2e-41 seq252 89.7 1e-12 >seq234 Length=227530 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || || |||| || || || ||||| || |||||||||||||| ||| || Sbjct 9921 CGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGATAGTGTTCGGCCA 9980 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| ||||| ||||| | | ||||||||||||||| |||||||| || Sbjct 9981 TCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAGGAATTCCTTCTTTG 10040 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | |||||| Sbjct 10041 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTTATG 10100 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||||||||| |||||||| Sbjct 10101 GTCTTGCCCGTAAGGGTCTTTACAAAGATCTGCAT 10135 >seq252 Length=176535 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429 |||| || || ||||| | ||| | | ||||||||||| || |||||||| || |||| Sbjct 29797 GAGAGGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCCAAGAAGATACTCGAGTGGA 29856 Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTA 198488 | || |||||| | || | |||| | | ||| || ||| | |||||| ||| Sbjct 29857 CGGCCACGCCGGAACAGGCGCTCGAGTACTCGATTCT-GCTCAACGACAAGTACAGTCTA 29915 Query 198489 GACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGAT 198548 ||||| ||||| ||||| || || || || |||||||| ||| | || |||| || Sbjct 29916 GACGGGCGCGATCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGGGGCATACACGAC 29975 Query 198549 CGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTAT 198599 | ||||| || | | |||||||| ||||| | || ||||| ||| Sbjct 29976 ATGGGCTGGAAGGAGCGTGCGATATTTGGAAAGATTCGCTACATGAACTAT 30026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981802858355965