Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq252 105 1e-17 >seq252 Length=176535 Score = 105 bits (116), Expect = 1e-17 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 183047 TGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTG 183106 || || |||| || || ||||| | ||| | || ||||||||||| || |||||||| | Sbjct 29791 TGGTGCGAGAGGGCAAGATGCACGGATTTCTGCGCATGTACTGGGCCAAGAAGATACTCG 29850 Query 183107 AATGGACAAGAACTCCGGAAGATGCTTT-GAGTTATAGTATCTATATGAACAATAAGTAC 183165 | ||||| || |||||| | || | |||| | | ||| | ||| | |||||| Sbjct 29851 AGTGGACGGCCACGCCGGAACAGGCGCTCGAGTACTCGATTCTGC-TCAACGACAAGTAC 29909 Query 183166 GAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTA 183225 |||||||| ||||| ||||| || || || || |||||||| ||| | || || Sbjct 29910 AGTCTAGACGGGCGCGATCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGGGGCATA 29969 Query 183226 CACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTAT 183282 ||||| | | ||||| || | | |||||||||||||| | || ||||| ||| Sbjct 29970 CACGACATGGGCTGGAAGGAGCGTGCGATATTTGGAAAGATTCGCTACATGAACTAT 30026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903389348741600