Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq328 230 6e-55 >seq328 Length=165906 Score = 230 bits (254), Expect = 6e-55 Identities = 595/896 (66%), Gaps = 22/896 (2%) Strand=Plus/Plus Query 110270 TATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACG 110329 |||||| |||| |||||| | | | | |||||||||| || || || || || || Sbjct 105549 TATTAT---TTATGATCGTGATTTCGGTTATAACTATTTTGGATTTAAGACGCTCGAGCG 105605 Query 110330 TGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCG 110389 | | ||||||||| | ||||| | || || ||||| ||||||||| | | || Sbjct 105606 TTCCTATTTACTTAAAATAAATGGGAAAATTGCAGAGCGTCCACAACACATGCTAATGCG 105665 Query 110390 TGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATT 110449 || || |||||||||||||| | |||||| || | | ||||| ||| | || | Sbjct 105666 CGTCGCTCTTGGTATTCATGGAGACGATATTGGTGCAGCTGTTGAAACTTACAACCTACT 105725 Query 110450 AAGTAAAAAGAAAGCTATT---CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 | | || | | || ||||| | || || || ||| || | || ||| | Sbjct 105726 ---TTCAGAGCGATATTTTACGCATGCCTCGCCAACTCTTTTTGCTGCTGCTACAAATCG 105782 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 ||| | | || || |||||| | ||| || ||||| ||||||||||||| Sbjct 105783 CCCTCAACTATCCTCATGTTTTCTTTTGACAATGAATTCGGATTCAATTGAAGGTATTTT 105842 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 | | | || || || ||| | ||||| ||| | || |||||||| || | || Sbjct 105843 TAAATCAGTTGAACAATGTGCAATGATTTCCAAATCAGCGGGTGGAATTGGACTTAATGT 105902 Query 110627 TCATGATATTCGCTCAAAAGGAGCAA--ATATC-GCAACAGCGAAGGGTGCTTCAACTGG 110683 |||| |||||| | ||||| | |||| | ||| ||| ||| |||||| ||| Sbjct 105903 TCATTGTATTCGTGCCAAAGGCACTTCCATATGTGGAAC---GAACGGTACTTCAAATGG 105959 Query 110684 ACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGGTGG 110740 | | ||||||||| ||||||| || || | ||| |||||| |||| |||||| Sbjct 105960 ATTAGTTCCAATGCTAAGAGTATTTAATAATGTGGCACGATATGTTGATCAGGGAGGTGG 106019 Query 110741 TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATT 110800 || ||| ||| | |||||||| ||| | || || |||||||||||| | |||||||| Sbjct 106020 AAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAATT 106079 Query 110801 CTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATG 110859 |||| || || || || || ||| |||||| | ||||||| ||| | ||||||| Sbjct 106080 TTTAG-ACCTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCACGGGATCTTTTTTATG 106138 Query 110860 CAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTA 110919 | | |||||| | ||| | ||||||||||| ||| ||| ||||| | ||||| | | Sbjct 106139 CTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAATGAAAACTGGTCGTTGA 106198 Query 110920 TGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTT 110979 ||||||| ||| | |||||| || ||||| | || || | ||||| | |||| Sbjct 106199 TGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAAAAATTTGAGCAACTTT 106258 Query 110980 ACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGG 111038 | | |||||||| |||| || | | | | ||| | | |||||| | ||| Sbjct 106259 ATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAAC-AGTGAAAGCTCAGTCGTTATGG 106317 Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098 || || | ||||| |||||||||||||| | || || || | | ||| ||| Sbjct 106318 TTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACATGCTTTTTAAGGATTCC 106377 Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 |||| | || |||||| ||| | || || ||||| | |||||||| || Sbjct 106378 TGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATG 106433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186783376314535