Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq328 230 6e-55
>seq328
Length=165906
Score = 230 bits (254), Expect = 6e-55
Identities = 595/896 (66%), Gaps = 22/896 (2%)
Strand=Plus/Plus
Query 110270 TATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACG 110329
|||||| |||| |||||| | | | | |||||||||| || || || || || ||
Sbjct 105549 TATTAT---TTATGATCGTGATTTCGGTTATAACTATTTTGGATTTAAGACGCTCGAGCG 105605
Query 110330 TGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCG 110389
| | ||||||||| | ||||| | || || ||||| ||||||||| | | ||
Sbjct 105606 TTCCTATTTACTTAAAATAAATGGGAAAATTGCAGAGCGTCCACAACACATGCTAATGCG 105665
Query 110390 TGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATT 110449
|| || |||||||||||||| | |||||| || | | ||||| ||| | || |
Sbjct 105666 CGTCGCTCTTGGTATTCATGGAGACGATATTGGTGCAGCTGTTGAAACTTACAACCTACT 105725
Query 110450 AAGTAAAAAGAAAGCTATT---CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506
| | || | | || ||||| | || || || ||| || | || ||| |
Sbjct 105726 ---TTCAGAGCGATATTTTACGCATGCCTCGCCAACTCTTTTTGCTGCTGCTACAAATCG 105782
Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566
||| | | || || |||||| | ||| || ||||| |||||||||||||
Sbjct 105783 CCCTCAACTATCCTCATGTTTTCTTTTGACAATGAATTCGGATTCAATTGAAGGTATTTT 105842
Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626
| | | || || || ||| | ||||| ||| | || |||||||| || | ||
Sbjct 105843 TAAATCAGTTGAACAATGTGCAATGATTTCCAAATCAGCGGGTGGAATTGGACTTAATGT 105902
Query 110627 TCATGATATTCGCTCAAAAGGAGCAA--ATATC-GCAACAGCGAAGGGTGCTTCAACTGG 110683
|||| |||||| | ||||| | |||| | ||| ||| ||| |||||| |||
Sbjct 105903 TCATTGTATTCGTGCCAAAGGCACTTCCATATGTGGAAC---GAACGGTACTTCAAATGG 105959
Query 110684 ACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGGTGG 110740
| | ||||||||| ||||||| || || | ||| |||||| |||| ||||||
Sbjct 105960 ATTAGTTCCAATGCTAAGAGTATTTAATAATGTGGCACGATATGTTGATCAGGGAGGTGG 106019
Query 110741 TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATT 110800
|| ||| ||| | |||||||| ||| | || || |||||||||||| | ||||||||
Sbjct 106020 AAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCATTCAGATGTTTTTGAATT 106079
Query 110801 CTTAGAACTTCGTAAAAATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATG 110859
|||| || || || || || ||| |||||| | ||||||| ||| | |||||||
Sbjct 106080 TTTAG-ACCTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCACGGGATCTTTTTTATG 106138
Query 110860 CAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTA 110919
| | |||||| | ||| | ||||||||||| ||| ||| ||||| | ||||| | |
Sbjct 106139 CTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAATGAAAACTGGTCGTTGA 106198
Query 110920 TGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTT 110979
||||||| ||| | |||||| || ||||| | || || | ||||| | ||||
Sbjct 106199 TGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAAAAATTTGAGCAACTTT 106258
Query 110980 ACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGG 111038
| | |||||||| |||| || | | | | ||| | | |||||| | |||
Sbjct 106259 ATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAAC-AGTGAAAGCTCAGTCGTTATGG 106317
Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098
|| || | ||||| |||||||||||||| | || || || | | ||| |||
Sbjct 106318 TTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACATGCTTTTTAAGGATTCC 106377
Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154
|||| | || |||||| ||| | || || ||||| | |||||||| ||
Sbjct 106378 TGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATGCAGTAATTTATG 106433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186783376314535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |