Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-15 seq23 87.8 4e-12 >seq6 Length=3104374 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| || || |||||||| |||| Sbjct 2898269 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 2898328 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | || |||||| Sbjct 2898329 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 2898388 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| ||||| Sbjct 2898389 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 2898448 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 2898449 ACCCTGCAC 2898457 >seq23 Length=1278451 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || || ||||| ||||| ||||| || || Sbjct 1264320 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAGGTTGAG 1264264 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || ||| ||||| || || || || ||||| || Sbjct 1264263 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 1264204 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || | || ||||||||||| |||||| |||| ||||| | ||| | | || Sbjct 1264203 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGAC 1264144 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| ||||||| ||||| ||||| || Sbjct 1264143 TACAACATCCAGAAGGAGTCCACTCTCCA 1264115 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||| |||| || || || ||| Sbjct 1263402 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1263343 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || ||||| || ||| || Sbjct 1263342 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263283 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | ||| | | || |||||| || Sbjct 1263282 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263223 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 1263222 CAGAAGGAGTCTACTCTCCA 1263203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181791500077135