Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 2e-15
seq23 87.8 4e-12
>seq6
Length=3104374
Score = 98.7 bits (108), Expect = 2e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || || || ||||| ||||| || || |||||||| ||||
Sbjct 2898269 AAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT 2898328
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || ||| || || || | || ||||||
Sbjct 2898329 GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTTC 2898388
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| ||||| | ||| || |||| |||||| ||||||| |||||
Sbjct 2898389 GCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCG 2898448
Query 206365 ACTCTTCAC 206373
|| || |||
Sbjct 2898449 ACCCTGCAC 2898457
>seq23
Length=1278451
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| ||| ||||| | || || ||||| ||||| ||||| || ||
Sbjct 1264320 AAAATG---CAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAGGTTGAG 1264264
Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283
|| ||||| | || || ||| ||||| || || || || ||||| ||
Sbjct 1264263 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCA 1264204
Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343
||| || | || ||||||||||| |||||| |||| ||||| | ||| | | ||
Sbjct 1264203 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGAC 1264144
Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|||||| ||||||| ||||| ||||| ||
Sbjct 1264143 TACAACATCCAGAAGGAGTCCACTCTCCA 1264115
Score = 86.0 bits (94), Expect = 1e-11
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || || ||||| ||||| |||| || || || |||
Sbjct 1263402 CAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCCGAC 1263343
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| || || || || ||||| || ||| ||
Sbjct 1263342 ACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1263283
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| |||||| |||| ||||| | ||| | | || |||||| ||
Sbjct 1263282 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAACATC 1263223
Query 206353 CAGAAAGAGTCTACTCTTCA 206372
||||| ||||||||||| ||
Sbjct 1263222 CAGAAGGAGTCTACTCTCCA 1263203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181791500077135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |