Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq328 134 1e-26
seq51 122 8e-23
seq35 87.8 2e-12
seq6 86.0 6e-12
>seq328
Length=165906
Score = 134 bits (148), Expect = 1e-26
Identities = 817/1296 (63%), Gaps = 21/1296 (2%)
Strand=Plus/Minus
Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610
|| || |||||| || | || || ||||||||||| ||||||||||| || |||||
Sbjct 107402 ACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 107343
Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670
|| ||| | ||| ||| | || || || |||| | |||| | ||||| |||
Sbjct 107342 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCC 107283
Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730
|| || ||||||||| || |||||||| || || || | || || ||||||| |
Sbjct 107282 ACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCTTA 107223
Query 146731 ATCATGCGTTTTGTCT-TCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGG 146789
|| || | ||| || |||||||| | ||||| || || | ||| | | ||
Sbjct 107222 ATTGTG-GATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGGGG 107164
Query 146790 AATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGG 146849
|||| |||||| |||||||| |||||| | | || || | ||| || ||
Sbjct 107163 AATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCATC 107104
Query 146850 CGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTC 146909
| | || | | | | || | ||||| ||||||||||||||||| ||
Sbjct 107103 ATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAATTC 107044
Query 146910 GCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATT 146969
|| | | || ||||| ||| | ||| | || | || || || || || |||||
Sbjct 107043 ACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTCGTTATT 106984
Query 146970 GCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAG 147029
|| | |||||||| || | ||| |||||||| || || ||||| ||||| | |
Sbjct 106983 ACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCTAAT 106924
Query 147030 ACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCAC 147089
|||| |||| || |||| ||||||| ||||| | || || ||
Sbjct 106923 TCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGGAGTTTT 106864
Query 147090 GTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTA 147149
| |||||| || || || || | || || | ||||| || | || |||
Sbjct 106863 ATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTTTCGTA 106804
Query 147150 GCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTC 147209
|| || | | |||||| || || || | || ||| | || || |||||
Sbjct 106803 CGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATAGTTTC 106744
Query 147210 GGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCAC 147269
||||||| ||||| | | |||||||| || || || || | ||||| || |
Sbjct 106743 AAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATTAGAAT 106684
Query 147270 AAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCG 147329
|| || || || ||||| || | ||| | || || || |||||| || |||
Sbjct 106683 TAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTT 106624
Query 147330 CTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388
||| || || || | ||| || | |||| || || || || || || || | |
Sbjct 106623 CTTAGCTTCTGGC-AAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAA 106565
Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGC 147448
|| ||| |||| ||| | ||| | ||||||| | || | ||| |||
Sbjct 106564 CAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGT---TTTTTCTGGTGTTACAA 106508
Query 147449 ATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACT 147508
| ||| | || || || || | |||||| || || |||| || | | |||||
Sbjct 106507 ACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACT 106448
Query 147509 GCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTGCTT 147567
|| ||||| | || | || |||||||| || | | |||| |||||| ||||||||
Sbjct 106447 CAACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTTGATTGCTC 106389
Query 147568 TTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC- 147626
|| | ||| || | || || || |||||||| || || || || ||||||| |||
Sbjct 106388 TTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCT 106329
Query 147627 --AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA-TAG--CGGCCCTCG 147681
|| | ||||| || | ||| ||| || | | | ||| ||| || |||||
Sbjct 106328 ATAATGGCAAACC-AT--AACGACTGAGCTTTCA-CTGTT--CGATTAGCACGTCCCTCT 106275
Query 147682 TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGA 147741
| || || | || | ||||||| | ||||| | ||| ||| || |||
Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215
Query 147742 CACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGA 147801
|| | ||| |||||||||| |||||| | || | || | ||| ||| ||| || |||
Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGA 106155
Query 147802 TCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837
|| || | ||| | || || | |||||| || |||
Sbjct 106154 TCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCT 106119
>seq51
Length=625475
Score = 122 bits (134), Expect = 8e-23
Identities = 229/336 (68%), Gaps = 3/336 (1%)
Strand=Plus/Minus
Query 51543 ATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA 51602
|| || |||| |||||||| | ||| |||| | ||||| |||||||||||||||
Sbjct 71585 ATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCG 71526
Query 51603 TGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACG 51662
||| | ||| | || || | ||||| || |||| |||| |||| || |
Sbjct 71525 TGGCCACCCTTGCCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATG 71466
Query 51663 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGTTG 51722
|| | | |||||||| || ||| |||| | || || | ||| || || |
Sbjct 71465 CTGTCGGCACCGAAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGGGCTGTCG 71406
Query 51723 GACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCG 51782
| |||| | |||||||||||||| | |||||| || | || | || ||
Sbjct 71405 CCGGCC---GCCTGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCA 71349
Query 51783 CCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTG 51842
||||| || ||| | ||| |||||||| ||| | |||| ||||||||||| || ||
Sbjct 71348 CCGTGCTCCTTGCTGCGGGGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTG 71289
Query 51843 TCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878
|||||||| |||||||| |||||||| ||||| |||
Sbjct 71288 TCGCCGAACTCGTGCACATGGAATCCATGCAGTCCC 71253
>seq35
Length=832945
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||||||| | | ||||| || || |||||||||||| || |||||
Sbjct 773435 CGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773494
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || ||||| || |||| | |||| | |||||| |||||||| || ||||| || ||
Sbjct 773495 TCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 773554
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| || || || | | || | || || | ||||| || || | || |
Sbjct 773555 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATG 773614
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || |||||||| || || | ||| |||||||||
Sbjct 773615 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650
>seq6
Length=3104374
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||
Sbjct 2898475 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 2898416
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| || ||||| || |||| |||| |||||||| |||||||| || |||||
Sbjct 2898415 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 2898356
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || || | ||||| || || |
Sbjct 2898355 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAA 2898296
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || ||||| |||||||| | ||||| |||||
Sbjct 2898295 GGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476599671966600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |