Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq328 134 1e-26 seq51 122 8e-23 seq35 87.8 2e-12 seq6 86.0 6e-12 >seq328 Length=165906 Score = 134 bits (148), Expect = 1e-26 Identities = 817/1296 (63%), Gaps = 21/1296 (2%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 || || |||||| || | || || ||||||||||| ||||||||||| || ||||| Sbjct 107402 ACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 107343 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 || ||| | ||| ||| | || || || |||| | |||| | ||||| ||| Sbjct 107342 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCC 107283 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 || || ||||||||| || |||||||| || || || | || || ||||||| | Sbjct 107282 ACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCTTA 107223 Query 146731 ATCATGCGTTTTGTCT-TCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGG 146789 || || | ||| || |||||||| | ||||| || || | ||| | | || Sbjct 107222 ATTGTG-GATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGGGG 107164 Query 146790 AATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGG 146849 |||| |||||| |||||||| |||||| | | || || | ||| || || Sbjct 107163 AATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCATC 107104 Query 146850 CGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTC 146909 | | || | | | | || | ||||| ||||||||||||||||| || Sbjct 107103 ATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAATTC 107044 Query 146910 GCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATT 146969 || | | || ||||| ||| | ||| | || | || || || || || ||||| Sbjct 107043 ACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAATGATTCGTTATT 106984 Query 146970 GCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAG 147029 || | |||||||| || | ||| |||||||| || || ||||| ||||| | | Sbjct 106983 ACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCTAAT 106924 Query 147030 ACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCAC 147089 |||| |||| || |||| ||||||| ||||| | || || || Sbjct 106923 TCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAAGTTCGTTGGAGTTTT 106864 Query 147090 GTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTA 147149 | |||||| || || || || | || || | ||||| || | || ||| Sbjct 106863 ATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTTTCGTA 106804 Query 147150 GCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTC 147209 || || | | |||||| || || || | || ||| | || || ||||| Sbjct 106803 CGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATAGTTTC 106744 Query 147210 GGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCAC 147269 ||||||| ||||| | | |||||||| || || || || | ||||| || | Sbjct 106743 AAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATTAGAAT 106684 Query 147270 AAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCG 147329 || || || || ||||| || | ||| | || || || |||||| || ||| Sbjct 106683 TAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTT 106624 Query 147330 CTTCGC-GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388 ||| || || || | ||| || | |||| || || || || || || || | | Sbjct 106623 CTTAGCTTCTGGC-AAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAA 106565 Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGC 147448 || ||| |||| ||| | ||| | ||||||| | || | ||| ||| Sbjct 106564 CAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGT---TTTTTCTGGTGTTACAA 106508 Query 147449 ATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACT 147508 | ||| | || || || || | |||||| || || |||| || | | ||||| Sbjct 106507 ACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACT 106448 Query 147509 GCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTGCTT 147567 || ||||| | || | || |||||||| || | | |||| |||||| |||||||| Sbjct 106447 CAACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTTGATTGCTC 106389 Query 147568 TTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC- 147626 || | ||| || | || || || |||||||| || || || || ||||||| ||| Sbjct 106388 TTTCTATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCT 106329 Query 147627 --AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA-TAG--CGGCCCTCG 147681 || | ||||| || | ||| ||| || | | | ||| ||| || ||||| Sbjct 106328 ATAATGGCAAACC-AT--AACGACTGAGCTTTCA-CTGTT--CGATTAGCACGTCCCTCT 106275 Query 147682 TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGA 147741 | || || | || | ||||||| | ||||| | ||| ||| || ||| Sbjct 106274 TGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGA 106215 Query 147742 CACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGA 147801 || | ||| |||||||||| |||||| | || | || | ||| ||| ||| || ||| Sbjct 106214 CATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGA 106155 Query 147802 TCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 || || | ||| | || || | |||||| || ||| Sbjct 106154 TCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCT 106119 >seq51 Length=625475 Score = 122 bits (134), Expect = 8e-23 Identities = 229/336 (68%), Gaps = 3/336 (1%) Strand=Plus/Minus Query 51543 ATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA 51602 || || |||| |||||||| | ||| |||| | ||||| ||||||||||||||| Sbjct 71585 ATGCCAATGACACCGCAGCCAATACGGGCGCCGGCATTGCCGGTGGTCTTGCTCAGCTCG 71526 Query 51603 TGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACG 51662 ||| | ||| | || || | ||||| || |||| |||| |||| || | Sbjct 71525 TGGCCACCCTTGCCCAAGTCATCAGCATCGGCGTGGACGACCACGGTGCGTCCAATGATG 71466 Query 51663 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGTTG 51722 || | | |||||||| || ||| |||| | || || | ||| || || | Sbjct 71465 CTGTCGGCACCGAAAAGAGTGATCTTTGAGTCGGTGATGCTGACAGCCGTGGGGCTGTCG 71406 Query 51723 GACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCG 51782 | |||| | |||||||||||||| | |||||| || | || | || || Sbjct 71405 CCGGCC---GCCTGAATGTTGCCCAAGTCGCCCAAGTGGCGGTTCTCGTCGGTGGGGGCA 71349 Query 51783 CCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTG 51842 ||||| || ||| | ||| |||||||| ||| | |||| ||||||||||| || || Sbjct 71348 CCGTGCTCCTTGCTGCGGGGATTGAAGTGGGGGCCGGACGACATGCAGCCGTTGGTGTTG 71289 Query 51843 TCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||||||| |||||||| |||||||| ||||| ||| Sbjct 71288 TCGCCGAACTCGTGCACATGGAATCCATGCAGTCCC 71253 >seq35 Length=832945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || || |||||||||||| || ||||| Sbjct 773435 CGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCG 773494 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | |||| | |||||| |||||||| || ||||| || || Sbjct 773495 TCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTG 773554 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | ||||| || || | || | Sbjct 773555 TCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAAGGTGATG 773614 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| || || | ||| ||||||||| Sbjct 773615 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650 >seq6 Length=3104374 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 2898475 ACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 2898416 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || ||||| Sbjct 2898415 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 2898356 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || || | ||||| || || | Sbjct 2898355 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAA 2898296 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||| |||||||| | ||||| ||||| Sbjct 2898295 GGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599671966600