Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq328 170 2e-37
>seq328
Length=165906
Score = 170 bits (188), Expect = 2e-37
Identities = 920/1445 (64%), Gaps = 39/1445 (3%)
Strand=Plus/Minus
Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698
|| || ||||| |||| ||| || || ||||| || | | ||| ||||| || || |||
Sbjct 107402 ACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 107343
Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758
| || | |||||| || |||||| |||| ||| || ||| | || ||||||
Sbjct 107342 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCC 107283
Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818
|| || ||| | ||| || || ||||| || | | || | || || ||||| ||
Sbjct 107282 ACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCTT- 107224
Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877
||| || ||| || || ||||||| | |||||| | || || ||||| | ||
Sbjct 107223 AATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGGGG 107164
Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGATCAGT 136937
||| || ||||| || | || || | || || ||||| | | | ||||
Sbjct 107163 AATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCATC 107104
Query 136938 CGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATATTC 136997
||| || |||| | | | | | ||| ||||| || |||||| ||||
Sbjct 107103 ATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAATTC 107044
Query 136998 GCCCGATAGCACTCTGC--GTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTG 137055
|| |||| |||| | ||| || | |||| | || | || ||||| ||||||||
Sbjct 107043 ACCAGATAATACTCGTCTCGTA--TATATATTAGTTGTATATGGTTCGAATGATTCGTTA 106986
Query 137056 TTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGT 137115
||||||| ||| || ||||| | ||||| ||||| ||| | ||||| |||||||
Sbjct 106985 TTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCTA 106926
Query 137116 AAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGG 137175
| |||||| | | || || || | || ||| | ||| | ||||| | |
Sbjct 106925 ATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA---GTTCGTTGGA 106869
Query 137176 GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAA 137235
||| ||| ||||| |||| | || | || || ||| |||||||| || ||| |
Sbjct 106868 GTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTT 106809
Query 137236 TCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATA 137295
|| || | || | || | |||||| ||| ||| || ||| | ||||||
Sbjct 106808 TCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATA 106749
Query 137296 GTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCCAAT 137355
||||| | |||| | || || |||||||||| || || ||||| | | || |
Sbjct 106748 GTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATT 106689
Query 137356 ATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTT 137415
| | ||||| || || | ||||||| ||| ||||| || || | || | |||||
Sbjct 106688 AGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTG 106629
Query 137416 GATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTGTT 137474
||| | | ||| || |||| || ||| |||| |||||| ||| |||| ||||| ||
Sbjct 106628 GATTTCTTAGCTTCTGGCAAG-GGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTT 106570
Query 137475 AGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGTTTGTT 137534
|| ||| | ||| || | | | || |||||| || |||| ||| ||||
Sbjct 106569 AGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTT-TTCTG-GTGTT 106512
Query 137535 AGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTATTGTCGCT 137594
| |||| | || | ||||| || ||||| ||||| || || | || | |
Sbjct 106511 A-CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGA 106453
Query 137595 GTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAA-ATTCTTTTGAT 137653
||| | |||||||| | || | ||| ||| | || | | |||| ||| | |||||
Sbjct 106452 GTACTCAACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTTGAT 106394
Query 137654 TG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCGGTTTCGACTTGA 137712
|| | ||||| || | ||| ||| | | ||| || || | || ||||| |||||
Sbjct 106393 TGCTCTTTCT-ATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGC 106335
Query 137713 GTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATT-----TGTTCTCTAA--ACTT 137765
| || | || || || |||| | | | ||||| | | || |
Sbjct 106334 GATTCTATAA------TGGCAAACCATAACGACTGAGCTTTCACTGTTCGATTAGCACGT 106281
Query 137766 GCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACAATCGT-TA 137824
||| || ||| | | | || || | | ||||||||||||| ||| ||| | |
Sbjct 106280 CCCTCTTGC-TCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAAC-ATCTTGAA 106223
Query 137825 GACCCGGACACTCGTCGGGACACATCAACGACCA-TTTTCCTCCCGTCCTAACCCTTTCC 137883
| || ||||| | | ||||||||||||||||| ||||| | | | ||||| || |
Sbjct 106222 GTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTC-AACCCGTTTC 106164
Query 137884 ATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGGCG 137943
||||| ||| || |||||| |||| ||| ||| || || || | |||||
Sbjct 106163 ATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTT 106104
Query 137944 CCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAG 138003
|| | || | ||| | || ||||| ||||| ||| | |||||| ||||| | |||
Sbjct 106103 CCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAA 106044
Query 138004 ACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACATGACGCAACATACTATTA 138060
| || | || || |||||| ||| || ||||| |||| || || | |||||
Sbjct 106043 ATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTA 105984
Query 138061 AAGAC 138065
|| ||
Sbjct 105983 AATAC 105979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445083634279200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |