Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq328 170 2e-37 >seq328 Length=165906 Score = 170 bits (188), Expect = 2e-37 Identities = 920/1445 (64%), Gaps = 39/1445 (3%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| |||| ||| || || ||||| || | | ||| ||||| || || ||| Sbjct 107402 ACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTT 107343 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | || | |||||| || |||||| |||| ||| || ||| | || |||||| Sbjct 107342 AGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCC 107283 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || ||| | ||| || || ||||| || | | || | || || ||||| || Sbjct 107282 ACATGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCAGCCATCTT- 107224 Query 136819 AATAGTACTTTTTGCTTAA-TTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||| || ||| || || ||||||| | |||||| | || || ||||| | || Sbjct 107223 AATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGAACATTTTGGGG 107164 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGATCAGT 136937 ||| || ||||| || | || || | || || ||||| | | | |||| Sbjct 107163 AATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTTTTCATATCATC 107104 Query 136938 CGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATATTC 136997 ||| || |||| | | | | | ||| ||||| || |||||| |||| Sbjct 107103 ATCCCATAAGTCCAACTCTGTTAAATCCCTTAATAAATGATGATTGACCACTTGAAATTC 107044 Query 136998 GCCCGATAGCACTCTGC--GTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTG 137055 || |||| |||| | ||| || | |||| | || | || ||||| |||||||| Sbjct 107043 ACCAGATAATACTCGTCTCGTA--TATATATTAGTTGTATATGGTTCGAATGATTCGTTA 106986 Query 137056 TTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGT 137115 ||||||| ||| || ||||| | ||||| ||||| ||| | ||||| ||||||| Sbjct 106985 TTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAACGAATTCCTA 106926 Query 137116 AAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGG 137175 | |||||| | | || || || | || ||| | ||| | ||||| | | Sbjct 106925 ATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA---GTTCGTTGGA 106869 Query 137176 GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAGAA 137235 ||| ||| ||||| |||| | || | || || ||| |||||||| || ||| | Sbjct 106868 GTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTCCTTTATAGGTT 106809 Query 137236 TCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAATA 137295 || || | || | || | |||||| ||| ||| || ||| | |||||| Sbjct 106808 TCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCCCAAAATAAATA 106749 Query 137296 GTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCCAAT 137355 ||||| | |||| | || || |||||||||| || || ||||| | | || | Sbjct 106748 GTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGGGAAAACGCATT 106689 Query 137356 ATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAATTT 137415 | | ||||| || || | ||||||| ||| ||||| || || | || | ||||| Sbjct 106688 AGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTG 106629 Query 137416 GATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTGTT 137474 ||| | | ||| || |||| || ||| |||| |||||| ||| |||| ||||| || Sbjct 106628 GATTTCTTAGCTTCTGGCAAG-GGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTT 106570 Query 137475 AGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGTTTGTT 137534 || ||| | ||| || | | | || |||||| || |||| ||| |||| Sbjct 106569 AGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTTT-TTCTG-GTGTT 106512 Query 137535 AGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTATTGTCGCT 137594 | |||| | || | ||||| || ||||| ||||| || || | || | | Sbjct 106511 A-CAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGA 106453 Query 137595 GTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAA-ATTCTTTTGAT 137653 ||| | |||||||| | || | ||| ||| | || | | |||| ||| | ||||| Sbjct 106452 GTACTCAACAATTTCTGTACATAAATTACTGCATTTAAT-AGTGCCAACATTTTGTTGAT 106394 Query 137654 TG-TTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCGGTTTCGACTTGA 137712 || | ||||| || | ||| ||| | | ||| || || | || ||||| ||||| Sbjct 106393 TGCTCTTTCT-ATTACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGC 106335 Query 137713 GTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATT-----TGTTCTCTAA--ACTT 137765 | || | || || || |||| | | | ||||| | | || | Sbjct 106334 GATTCTATAA------TGGCAAACCATAACGACTGAGCTTTCACTGTTCGATTAGCACGT 106281 Query 137766 GCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCCCATAACAATCGT-TA 137824 ||| || ||| | | | || || | | ||||||||||||| ||| ||| | | Sbjct 106280 CCCTCTTGC-TCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAAC-ATCTTGAA 106223 Query 137825 GACCCGGACACTCGTCGGGACACATCAACGACCA-TTTTCCTCCCGTCCTAACCCTTTCC 137883 | || ||||| | | ||||||||||||||||| ||||| | | | ||||| || | Sbjct 106222 GTCCAGGACATTTATGTGGACACATCAACGACCAGTTTTCATTTGCTTC-AACCCGTTTC 106164 Query 137884 ATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCTTCGGCG 137943 ||||| ||| || |||||| |||| ||| ||| || || || | ||||| Sbjct 106163 ATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTCGGTTTTCTTCTTTT 106104 Query 137944 CCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGATATAG 138003 || | || | ||| | || ||||| ||||| ||| | |||||| ||||| | ||| Sbjct 106103 CCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCCAGGGCTCTAAATAA 106044 Query 138004 ACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACATGACGCAACATACTATTA 138060 | || | || || |||||| ||| || ||||| |||| || || | ||||| Sbjct 106043 ATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGTGCCACATTATTA 105984 Query 138061 AAGAC 138065 || || Sbjct 105983 AATAC 105979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083634279200