Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq162 163 3e-35 >seq162 Length=246154 Score = 163 bits (180), Expect = 3e-35 Identities = 436/653 (67%), Gaps = 34/653 (5%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || || ||||| || || ||||| || || | | ||||| || || || || || Sbjct 68236 ATTTTCAGCTTTGGAAACGGTCGTGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACA 68177 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| || || || || | ||| |||| |||||| ||||| || |||| ||| | ||| Sbjct 68176 TGGTTAAGATACACATGAGTGTCGCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCC 68117 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || || || || | ||||| ||||||||| | ||| ||| ||||||||||| || ||| Sbjct 68116 GTTACATGTGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCC 68057 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG-------GC 147104 ||||||||||| | || ||| ||||||||||| |||||||| || ||| | Sbjct 68056 AGGCCCATGTCGGCGCTCCGCTGATACAGCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGA 67998 Query 147105 CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 ||||| || || ||| ||| |||||| || || | ||||| || | |||| || Sbjct 67997 GACGTAGAATTGTGCA-AGGCAGTGGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGG 67939 Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTC--TCGGGGTTCCTCTTAATCTCTTCGAT 147221 | |||||||| || | | | || | | || || | | || | || | || Sbjct 67938 GATTCCAGGCGGACATAATGATGCGAC-GATCGGATGGATTATCCCTGATGGTCCT-AAT 67881 Query 147222 AACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGT--TTGTCCCGCAGTCCACGTAC 147279 ||| | || |||||| | |||| ||| | ||||| | || ||||| | ||| Sbjct 67880 TACCTGGCGCAACTGGTCGATTCCCTTGCCGCTGTAGTCATCGT--CGCAGGTGCCATAC 67823 Query 147280 CTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCC--GGGCTTTC 147337 ||| |||||||| | |||||| ||||| || || || ||||| || || ||| | Sbjct 67822 TCGGCACCAAAGTGTCGCCACTGAAAGCCATAGACAGGACCCAGATCTCCCACGGC--GC 67765 Query 147338 TGTGCGAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGC 147394 || || | || || ||||| |||||||| || | || | | ||||| ||| Sbjct 67764 GGTCCGTGTGGC---CCAGCTTGTCTAGAAACTCTCTGGTGCTGTTGCCATCCCAAATGT 67708 Query 147395 CCACTCCCTTGGC---GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCA 147451 ||| ||| || |||| ||| | || || || | ||||| |||| Sbjct 67707 GCACGTTCTTCGCCTGCAAGAG---CTTCGCATCTGTCTTTCCGGCCACAAACCATAGCA 67651 Query 147452 GCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 147504 ||||||||| ||| ||| | || |||| |||||||||||||||||| ||| Sbjct 67650 GCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGGTGGTCAGCAGGGGAAAC 67598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583473886884000