Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq111 178 2e-38 seq71 165 1e-34 seq72 89.7 7e-12 >seq111 Length=362587 Score = 178 bits (196), Expect = 2e-38 Identities = 356/519 (69%), Gaps = 9/519 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 ||||||| |||||||| ||||| | || ||||| || || || | ||| || | Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAG--GACGCGACAGA 245137 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| |||| |||| |||||||| | |||||| ||||| || ||||| || || Sbjct 245136 CTGGGCCCGTCTGACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTT-CG 245078 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | ||| ||||||||| || |||||| |||| || ||||| | | ||||| || Sbjct 245077 CTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGA 245018 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| |||| || ||||| |||||||| ||||| || ||| | ||||| || | Sbjct 245017 TCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGA 244958 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| | || || ||||||||| | ||| ||| ||| ||| || | || Sbjct 244957 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCA 244898 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 || | || || ||||| | || | | ||||| |||||||| || ||||| | Sbjct 244897 ATGCTGTTGAGACCATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGAT-A 244839 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212 | || | | | ||||||||||||| | | | |||||| || || || || || Sbjct 244838 TCCTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAAT 244780 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||| ||||| || | | ||||||||||| |||||||| |||||||||||||| Sbjct 244779 CTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGG 244720 Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 || | ||| |||||| | ||| ||| ||||||| Sbjct 244719 TC-TGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAG 244682 Score = 91.5 bits (100), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 ||||||| || || ||||| |||||| ||||||| ||| ||| | ||||| Sbjct 244609 AGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCA 244550 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || ||||||||| | | ||||||| ||||||||||||| ||||||||||| || Sbjct 244549 ATTTGATTGGCATGAACTGCGTC-CTCATGTCCCAGTACATTGAA-TTTGTCGCCGATCG 244492 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 ||||| || |||||| || || ||| |||| || || || ||| | | Sbjct 244491 TCTGCTGATGGAGCTCGG-TGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGTTTCA 244433 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| ||||||| || || || ||||| ||||| || ||| Sbjct 244432 TGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTGAG 244392 >seq71 Length=537415 Score = 165 bits (182), Expect = 1e-34 Identities = 248/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| ||||| || || ||| | || |||||||| | || || | ||||||| Sbjct 120331 AAGCGCAGCATGGCGCATCGCGACTGTATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 120273 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 ||| ||||| ||||| ||||| ||| | | | |||||||| ||| || || ||||| | Sbjct 120272 GGCTAGGGCGAACCGTGTCGTGTTGCTGTAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 120214 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 |||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | | Sbjct 120213 GGGCGCCCTCCGTCATGCTGTCTGCCTCGTCCAGGATAACGATCTTGTGCCGACCCTTGG 120154 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 |||| ||| ||| | ||| ||||| | || ||||| || || | ||||| Sbjct 120153 GCAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTTCGCACCACATCGATGCCGC 120094 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 |||||| ||| || || || || ||||||||||| | | | | || | |||| || Sbjct 120093 GCTCGTTCGAGGCATTCAGCTCTAGCACGGCCTCCTTGTAGCTGTCTCCGAGTAGGATGC 120034 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | ||||||||| ||| ||||||||||||| ||| || |||||| Sbjct 120033 GGGCCAGGCACTGAATGGTCGTGGTCTTGCCAACGCCAGGAGGACCC 119987 >seq72 Length=518284 Score = 89.7 bits (98), Expect = 7e-12 Identities = 66/75 (88%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 1817559 CACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAA 1817616 |||||||||||||| || || ||||| |||||||||||||||||||||||||| || | Sbjct 384540 CACCTCGGCGCGCGTCTC-CATTGACTGCGGCACATGGAGGTTCATCTCGTCGCCATCGA 384482 Query 1817617 AGTCGGCATTGTAGG 1817631 | ||||||||||||| Sbjct 384481 AATCGGCATTGTAGG 384467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177624565693470