Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq111 178 2e-38
seq71 165 1e-34
seq72 89.7 7e-12
>seq111
Length=362587
Score = 178 bits (196), Expect = 2e-38
Identities = 356/519 (69%), Gaps = 9/519 (2%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853
||||||| |||||||| ||||| | || ||||| || || || | ||| || |
Sbjct 245194 AGGCCGAAGCCTCCTTCTGGACTGTGGAAGAGGTGGATCTATCGAAG--GACGCGACAGA 245137
Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913
||||| |||| |||| |||||||| | |||||| ||||| || ||||| || ||
Sbjct 245136 CTGGGCCCGTCTGACCGACAACGAGCGCTACTTCATCTCCCACGTGCTGGCCTTCTT-CG 245078
Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973
| ||| ||||||||| || |||||| |||| || ||||| | | ||||| ||
Sbjct 245077 CTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTCAGGAGGTGCAGA 245018
Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033
| | ||||| |||| || ||||| |||||||| ||||| || ||| | ||||| || |
Sbjct 245017 TCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACGTGCACTCCGAGA 244958
Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093
||| | || || ||||||||| | ||| ||| ||| ||| || | ||
Sbjct 244957 TGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGCGCGACTACTTGTTCA 244898
Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153
|| | || || ||||| | || | | ||||| |||||||| || ||||| |
Sbjct 244897 ATGCTGTTGAGACCATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGAT-A 244839
Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCAT 1456212
| || | | | ||||||||||||| | | | |||||| || || || || ||
Sbjct 244838 TCCTCGAAATCGGCCA-ACTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAAT 244780
Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
||| ||| ||||| || | | ||||||||||| |||||||| ||||||||||||||
Sbjct 244779 CTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGG 244720
Query 1456273 TCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311
|| | ||| |||||| | ||| ||| |||||||
Sbjct 244719 TC-TGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAG 244682
Score = 91.5 bits (100), Expect = 2e-12
Identities = 155/221 (70%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
||||||| || || ||||| |||||| ||||||| ||| ||| | |||||
Sbjct 244609 AGATCATTAGGGATGCTGTCGAAATCGAGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCA 244550
Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
| || ||||||||| | | ||||||| ||||||||||||| ||||||||||| ||
Sbjct 244549 ATTTGATTGGCATGAACTGCGTC-CTCATGTCCCAGTACATTGAA-TTTGTCGCCGATCG 244492
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
||||| || |||||| || || ||| |||| || || || ||| | |
Sbjct 244491 TCTGCTGATGGAGCTCGG-TGTGGGTAAGATCTACAACACTAAGAATCCCTTCAGTTTCA 244433
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||| ||||||| || || || ||||| ||||| || |||
Sbjct 244432 TGGATATGATCTCTCTGGACGGAAAGACAAACTTCTTTGAG 244392
>seq71
Length=537415
Score = 165 bits (182), Expect = 1e-34
Identities = 248/347 (71%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|||||||| ||||| || || ||| | || |||||||| | || || | |||||||
Sbjct 120331 AAGCGCAGCATGGCGCATCGCGACTGTATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 120273
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990
||| ||||| ||||| ||||| ||| | | | |||||||| ||| || || ||||| |
Sbjct 120272 GGCTAGGGCGAACCGTGTCGTGTTGCTGTAGATCTCCATGGTGCGA-CGCAGCGCCTGCT 120214
Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050
|||| || ||| | || ||| |||||||| ||||| | ||||||||| || || | |
Sbjct 120213 GGGCGCCCTCCGTCATGCTGTCTGCCTCGTCCAGGATAACGATCTTGTGCCGACCCTTGG 120154
Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110
|||| ||| ||| | ||| ||||| | || ||||| || || | |||||
Sbjct 120153 GCAGCGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTTCGCACCACATCGATGCCGC 120094
Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170
|||||| ||| || || || || ||||||||||| | | | | || | |||| ||
Sbjct 120093 GCTCGTTCGAGGCATTCAGCTCTAGCACGGCCTCCTTGTAGCTGTCTCCGAGTAGGATGC 120034
Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
| ||||||||| ||| ||||||||||||| ||| || ||||||
Sbjct 120033 GGGCCAGGCACTGAATGGTCGTGGTCTTGCCAACGCCAGGAGGACCC 119987
>seq72
Length=518284
Score = 89.7 bits (98), Expect = 7e-12
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 1817559 CACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAA 1817616
|||||||||||||| || || ||||| |||||||||||||||||||||||||| || |
Sbjct 384540 CACCTCGGCGCGCGTCTC-CATTGACTGCGGCACATGGAGGTTCATCTCGTCGCCATCGA 384482
Query 1817617 AGTCGGCATTGTAGG 1817631
| |||||||||||||
Sbjct 384481 AATCGGCATTGTAGG 384467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177624565693470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |