Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq328 645 4e-180
>seq328
Length=165906
Score = 645 bits (714), Expect = 4e-180
Identities = 1263/1851 (68%), Gaps = 28/1851 (2%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| |||||||| |||| ||| ||||| |||||||| || || |||| | | |||
Sbjct 107378 GCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 107319
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| || ||| | ||| || | || ||||| | ||||| ||| | ||| ||||||
Sbjct 107318 TGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCCACATGAACATTAAACGACTGACTT 107259
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574
||||| || || || |||||||| || ||||| || || | || | |||||||
Sbjct 107258 TGATCAATAAATGCACCTCTATCAGCAGCCATCTTAATTGTGGATTTAACTGAAATTTCC 107199
Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCT---GGAA--GGCTCG-TATTTTGAATG 68628
|| | || ||| ||| | | | | ||| | |||| | || |||||||||||
Sbjct 107198 CACACTGTTTTATAAA---GATCGCGAACATTTTGGGGAATAGTTTCAATATTTTGAATG 107142
Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688
|| || | | || || ||| |||| || || ||||||| ||| || | ||| |||
Sbjct 107141 GAGCCCCTACTTGAAATTATTTTATTTTTCATATCATCATCCCATAAGTCCAACTCTGTT 107082
Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748
||| | || | | ||| |||| || | ||||||||| |||||||| |||| | ||
Sbjct 107081 AAATCCCTTAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 107022
Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808
|| |||||| | ||||||||||| | ||||| ||||| |||| |||||| ||||| |||
Sbjct 107021 TATATATTAGTTGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGGGCAGTAGAT 106962
Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868
|| || |||||||| || || || || ||| |||| || ||| || | || | |||
Sbjct 106961 GCTGTAGGCATAGGAGCTACTAACAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCT 106902
Query 68869 TTTAGATGTTTCCAATCCCA-AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927
|| || | || ||||||||| ||| || | ||| || ||| | ||| ||||||||
Sbjct 106901 TTCAGGTTTTGCCAATCCCATAAGTTC-GTTGGAGTTTTATCCCACATATCATATTGTAG 106843
Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987
||| || || ||| || ||| ||||| ||||| || || || || || ||
Sbjct 106842 AATGCCATTGCTTACAGGACTTCCTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAG 106783
Query 68988 TTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 69047
||||||||| || ||||| || || ||||||| ||||| || || | | || | |
Sbjct 106782 TTCACAACTAGCTTCTAAAGCCCCAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAG 106723
Query 69048 TTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTG 69107
|||||| ||| || | ||| || | | ||||| || || || || || || ||
Sbjct 106722 ACTAGCTTCTTCACTTTCATAGGGAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTG 106663
Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167
||| || ||||| || || | ||| || ||| || | | ||||||||| | || ||
Sbjct 106662 AACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTA 106603
Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227
||| || || ||||| ||||||||||||||| | || ||| || || ||||
Sbjct 106602 ATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAA 106543
Query 69228 TTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCTAG 69284
||| ||||||||| | ||| | |||||||| || ||||| | || ||||
Sbjct 106542 TTTTTTGAAATCAAATGTTTTTTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAA 106483
Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATTATCTCTGTACATAGATT 69341
||| ||||| || | ||||| || |||| || | | || |||||||||| |||
Sbjct 106482 ATTGCAAACAGCGATCTCATCAGG---TGCAGAGTACTCAACAATTTCTGTACATAAATT 106426
Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401
||| ||||| ||||| || | |||||| ||||| |||||| | ||||||| ||||| |
Sbjct 106425 ACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAA 106366
Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGACCC 69460
||| || | || |||||||||||| || ||||| ||||| | ||| ||||||
Sbjct 106365 AAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGCAAACCATAACGACTG 106306
Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTC 69518
||| || | | | || || | | || || || ||||||| ||| || | ||
Sbjct 106305 -AGCTTTCACT--GTTCGATTAGCACGTCCCTCTTGCTCATATTTGACATAAAGTTGCTC 106249
Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578
|||| || ||||||||||| | | ||||||||||| || |||||||||||| |||||
Sbjct 106248 AAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGACACATCAACGACCA 106189
Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638
|||| | | ||| |||||||| || |||||||||||||| | ||| ||| ||
Sbjct 106188 GTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAG 106129
Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698
||| | | || |||||||| ||||| || ||| |||| || || | ||| || | ||
Sbjct 106128 ATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAAC 106069
Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758
||| |||||||| || |||| ||| || || | | | || |||| ||| ||||||||
Sbjct 106068 ATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTG 106009
Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA-TAATACCATTAGATT 69817
||| | |||| || |||||| | ||||| ||||| |||| |||| ||||| ||
Sbjct 106008 ATCAACATATCGTGCCACATTATTAAATACTCTTAGCATTGGAACTAAT-CCATTTGAAG 105950
Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877
|||| || |||||| | || || | ||| | || |||||| | || | || || |
Sbjct 105949 TACCGTTCGTTCCACATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAA 105890
Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937
|||| || || ||| || || | ||||| ||| | || | | | ||||| || |
Sbjct 105889 TTCCACCCGCTGATTTGGAAATCATTGCACATTGTTCAACTGATTTAAAAATACCTTCAA 105830
Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997
| ||| |||| | | ||||||||| || | |||| | | | || | |
Sbjct 105829 TTGAATCCGAATTCATTGTCAAAAGAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAG 105770
Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057
|| ||| | || || || || || || || || || ||||| || ||||| ||||
Sbjct 105769 CAGCAAAAAGAGTTGGCGAGGCATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTT 105710
Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117
||| ||||| | ||||| |||||| || | ||||| ||||| | ||| || |
Sbjct 105709 CAACAGCTGCACCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATTAGCATGTGTT 105650
Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177
| || || ||| | |||| ||||||||| | | || || || || || ||||
Sbjct 105649 GTGGACGCTCTGCAATTTTCCCATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAA 105590
Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228
| ||||||||||| || || || | || ||||||||| |||| ||||
Sbjct 105589 ATCCAAAATAGTTATAACCGAAATCACGATCATAAATAATAGCAGAGTTTA 105539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686892185393400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |