Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq328 645 4e-180 >seq328 Length=165906 Score = 645 bits (714), Expect = 4e-180 Identities = 1263/1851 (68%), Gaps = 28/1851 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| |||| ||| ||||| |||||||| || || |||| | | ||| Sbjct 107378 GCTGGTTTTGTGCGTAAATAATACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 107319 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| | ||| || | || ||||| | ||||| ||| | ||| |||||| Sbjct 107318 TGTATGGATGTCAATTTTCCGTAGTTAGGCTCGGCCACATGAACATTAAACGACTGACTT 107259 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || |||||||| || ||||| || || | || | ||||||| Sbjct 107258 TGATCAATAAATGCACCTCTATCAGCAGCCATCTTAATTGTGGATTTAACTGAAATTTCC 107199 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCT---GGAA--GGCTCG-TATTTTGAATG 68628 || | || ||| ||| | | | | ||| | |||| | || ||||||||||| Sbjct 107198 CACACTGTTTTATAAA---GATCGCGAACATTTTGGGGAATAGTTTCAATATTTTGAATG 107142 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || || | | || || ||| |||| || || ||||||| ||| || | ||| ||| Sbjct 107141 GAGCCCCTACTTGAAATTATTTTATTTTTCATATCATCATCCCATAAGTCCAACTCTGTT 107082 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 ||| | || | | ||| |||| || | ||||||||| |||||||| |||| | || Sbjct 107081 AAATCCCTTAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 107022 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 || |||||| | ||||||||||| | ||||| ||||| |||| |||||| ||||| ||| Sbjct 107021 TATATATTAGTTGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGGGCAGTAGAT 106962 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || || |||||||| || || || || ||| |||| || ||| || | || | ||| Sbjct 106961 GCTGTAGGCATAGGAGCTACTAACAACGAATTCCTAATTCCGTGTTTTTTAATGTCTTCT 106902 Query 68869 TTTAGATGTTTCCAATCCCA-AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 || || | || ||||||||| ||| || | ||| || ||| | ||| |||||||| Sbjct 106901 TTCAGGTTTTGCCAATCCCATAAGTTC-GTTGGAGTTTTATCCCACATATCATATTGTAG 106843 Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987 ||| || || ||| || ||| ||||| ||||| || || || || || || Sbjct 106842 AATGCCATTGCTTACAGGACTTCCTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAG 106783 Query 68988 TTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 69047 ||||||||| || ||||| || || ||||||| ||||| || || | | || | | Sbjct 106782 TTCACAACTAGCTTCTAAAGCCCCAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAG 106723 Query 69048 TTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTG 69107 |||||| ||| || | ||| || | | ||||| || || || || || || || Sbjct 106722 ACTAGCTTCTTCACTTTCATAGGGAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTG 106663 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 ||| || ||||| || || | ||| || ||| || | | ||||||||| | || || Sbjct 106662 AACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCTTCTGGCAAGGGGTA 106603 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 ||| || || ||||| ||||||||||||||| | || ||| || || |||| Sbjct 106602 ATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAA 106543 Query 69228 TTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCTAG 69284 ||| ||||||||| | ||| | |||||||| || ||||| | || |||| Sbjct 106542 TTTTTTGAAATCAAATGTTTTTTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAA 106483 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATTATCTCTGTACATAGATT 69341 ||| ||||| || | ||||| || |||| || | | || |||||||||| ||| Sbjct 106482 ATTGCAAACAGCGATCTCATCAGG---TGCAGAGTACTCAACAATTTCTGTACATAAATT 106426 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 ||| ||||| ||||| || | |||||| ||||| |||||| | ||||||| ||||| | Sbjct 106425 ACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTACAGGAATCCTTAAA 106366 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGACCC 69460 ||| || | || |||||||||||| || ||||| ||||| | ||| |||||| Sbjct 106365 AAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGCAAACCATAACGACTG 106306 Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTC 69518 ||| || | | | || || | | || || || ||||||| ||| || | || Sbjct 106305 -AGCTTTCACT--GTTCGATTAGCACGTCCCTCTTGCTCATATTTGACATAAAGTTGCTC 106249 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 |||| || ||||||||||| | | ||||||||||| || |||||||||||| ||||| Sbjct 106248 AAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGACACATCAACGACCA 106189 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 |||| | | ||| |||||||| || |||||||||||||| | ||| ||| || Sbjct 106188 GTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAG 106129 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||| | | || |||||||| ||||| || ||| |||| || || | ||| || | || Sbjct 106128 ATCCCGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAAC 106069 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 ||| |||||||| || |||| ||| || || | | | || |||| ||| |||||||| Sbjct 106068 ATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTG 106009 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA-TAATACCATTAGATT 69817 ||| | |||| || |||||| | ||||| ||||| |||| |||| ||||| || Sbjct 106008 ATCAACATATCGTGCCACATTATTAAATACTCTTAGCATTGGAACTAAT-CCATTTGAAG 105950 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 |||| || |||||| | || || | ||| | || |||||| | || | || || | Sbjct 105949 TACCGTTCGTTCCACATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAA 105890 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 |||| || || ||| || || | ||||| ||| | || | | | ||||| || | Sbjct 105889 TTCCACCCGCTGATTTGGAAATCATTGCACATTGTTCAACTGATTTAAAAATACCTTCAA 105830 Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 | ||| |||| | | ||||||||| || | |||| | | | || | | Sbjct 105829 TTGAATCCGAATTCATTGTCAAAAGAAAACATGAGGATAGTTGAGGGCGATTTGTAGCAG 105770 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 || ||| | || || || || || || || || || ||||| || ||||| |||| Sbjct 105769 CAGCAAAAAGAGTTGGCGAGGCATGCGTAAAATATCGCTCTGAAAGTAGGTTGTAAGTTT 105710 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 ||| ||||| | ||||| |||||| || | ||||| ||||| | ||| || | Sbjct 105709 CAACAGCTGCACCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATTAGCATGTGTT 105650 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | || || ||| | |||| ||||||||| | | || || || || || |||| Sbjct 105649 GTGGACGCTCTGCAATTTTCCCATTTATTTTAAGTAAATAGGAACGCTCGAGCGTCTTAA 105590 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 | ||||||||||| || || || | || ||||||||| |||| |||| Sbjct 105589 ATCCAAAATAGTTATAACCGAAATCACGATCATAAATAATAGCAGAGTTTA 105539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892185393400