Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq162 100 2e-16 seq111 87.8 1e-12 >seq162 Length=246154 Score = 100 bits (110), Expect = 2e-16 Identities = 361/560 (64%), Gaps = 16/560 (3%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || ||||| |||||||| ||||| ||||||| |||||| ||||| || | |||| ||| Sbjct 67773 GGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCACC 67832 Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATT 40985 || ||| || | | || ||||| || || || | || || || || Sbjct 67833 TGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCATC 67892 Query 40986 A-----AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 | ||||| |||| ||| || || || || ||| ||| ||||| || |||| Sbjct 67893 AGGGATAATCC-ATCC-GAT---CGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACA 67947 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTG-CAAT--- 41096 ||| |||||||| || || || || | | || || ||||| | ||| Sbjct 67948 TACCAAAAATGGCATTACCCCCCTGCCACTGCCTTGCACAATTCTACGTCTCTCAAACTC 68007 Query 41097 --GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 || || || || || || ||||||| | | |||||||| || || || || | Sbjct 68008 GAGGAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCT 68067 Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAAC 41214 | ||||| || ||||| |||||||| | ||||||||||| || || || || Sbjct 68068 TCAACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGA 68127 Query 41215 CTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGT 41274 | || || ||||| ||||| | || || ||| | || |||| || | || || Sbjct 68128 CGGGCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCAC 68187 Query 41275 TAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTG 41334 ||| || || || ||| || || |||| ||||||| ||| || || || | Sbjct 68188 TAAAGGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAATCAAGCGAAAGG 68247 Query 41335 TTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACC 41394 | || |||||||| || ||| | ||| || |||| || || ||| |||| |||| Sbjct 68248 TCGAGAACATTGAAGAATTTCGATACGAAGACTTTGAGGTCATCGGCTACGATCCTTACC 68307 Query 41395 CTAAAATCCACATGGACATG 41414 |||| || | ||||||||| Sbjct 68308 CTAAGATAAAGATGGACATG 68327 >seq111 Length=362587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 279/428 (65%), Gaps = 5/428 (1%) Strand=Plus/Minus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || || ||||| ||| || || || || || ||| |||| || || | Sbjct 245089 TGGCCTTCTTCGCTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTC 245030 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | || || || | | || || || || || || || || || |||||||| || || Sbjct 245029 AGGAGGTGCAGATCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACG 244970 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || |||||||| | || || || || ||||| || | | ||| || Sbjct 244969 TGCACTCCGAGATGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGC-GC 244911 Query 44034 ATCGA-TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | | ||||| ||||| | || || | || || | || | || |||||||||||| Sbjct 244910 GACTACTTGTTCAATGCTGTTGAGACCATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCC 244851 Query 44093 CTTAAATGGATAAATTC-AAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 || |||||| || |||| | |||| || || || | || ||||||| Sbjct 244850 CTGTCCTGGATATCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCC 244791 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 |||||||| || ||||| || ||||| | || |||||| | ||||| || || Sbjct 244790 GTGGAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGC 244731 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269 | ||||| || |||| || || || ||| | || |||||| ||||| | || ||| Sbjct 244730 CTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGC 244671 Query 44270 GATTTTGC 44277 || ||||| Sbjct 244670 GACTTTGC 244663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446626869675