Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq162 100 2e-16
seq111 87.8 1e-12
>seq162
Length=246154
Score = 100 bits (110), Expect = 2e-16
Identities = 361/560 (64%), Gaps = 16/560 (3%)
Strand=Plus/Plus
Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925
|| ||||| |||||||| ||||| ||||||| |||||| ||||| || | |||| |||
Sbjct 67773 GGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCACC 67832
Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATT 40985
|| ||| || | | || ||||| || || || | || || || ||
Sbjct 67833 TGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCATC 67892
Query 40986 A-----AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040
| ||||| |||| ||| || || || || ||| ||| ||||| || ||||
Sbjct 67893 AGGGATAATCC-ATCC-GAT---CGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACA 67947
Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTG-CAAT--- 41096
||| |||||||| || || || || | | || || ||||| | |||
Sbjct 67948 TACCAAAAATGGCATTACCCCCCTGCCACTGCCTTGCACAATTCTACGTCTCTCAAACTC 68007
Query 41097 --GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154
|| || || || || || ||||||| | | |||||||| || || || || |
Sbjct 68008 GAGGAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCT 68067
Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAAC 41214
| ||||| || ||||| |||||||| | ||||||||||| || || || ||
Sbjct 68068 TCAACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGA 68127
Query 41215 CTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGT 41274
| || || ||||| ||||| | || || ||| | || |||| || | || ||
Sbjct 68128 CGGGCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCAC 68187
Query 41275 TAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTG 41334
||| || || || ||| || || |||| ||||||| ||| || || || |
Sbjct 68188 TAAAGGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAATCAAGCGAAAGG 68247
Query 41335 TTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACC 41394
| || |||||||| || ||| | ||| || |||| || || ||| |||| ||||
Sbjct 68248 TCGAGAACATTGAAGAATTTCGATACGAAGACTTTGAGGTCATCGGCTACGATCCTTACC 68307
Query 41395 CTAAAATCCACATGGACATG 41414
|||| || | |||||||||
Sbjct 68308 CTAAGATAAAGATGGACATG 68327
>seq111
Length=362587
Score = 87.8 bits (96), Expect = 1e-12
Identities = 279/428 (65%), Gaps = 5/428 (1%)
Strand=Plus/Minus
Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913
|||| || || ||||| ||| || || || || || ||| |||| || || |
Sbjct 245089 TGGCCTTCTTCGCTGCCTCCGATGGCATTGTTAACGAGAATCTGGTCGAGCGCTTCAGTC 245030
Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973
| || || || | | || || || || || || || || || |||||||| || ||
Sbjct 245029 AGGAGGTGCAGATCACGGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCCATGGAGAACG 244970
Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033
| || || || |||||||| | || || || || ||||| || | | ||| ||
Sbjct 244969 TGCACTCCGAGATGTACAGCGTGCTCATTGACACCTACATACGGGAGCCGAAGGAGC-GC 244911
Query 44034 ATCGA-TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092
| | ||||| ||||| | || || | || || | || | || ||||||||||||
Sbjct 244910 GACTACTTGTTCAATGCTGTTGAGACCATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCC 244851
Query 44093 CTTAAATGGATAAATTC-AAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149
|| |||||| || |||| | |||| || || || | || |||||||
Sbjct 244850 CTGTCCTGGATATCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCAGCC 244791
Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209
|||||||| || ||||| || ||||| | || |||||| | ||||| || ||
Sbjct 244790 GTGGAAGGAATCTTCTTCAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGC 244731
Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGC 44269
| ||||| || |||| || || || ||| | || |||||| ||||| | || |||
Sbjct 244730 CTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACTGC 244671
Query 44270 GATTTTGC 44277
|| |||||
Sbjct 244670 GACTTTGC 244663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397446626869675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |