Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq328 235 5e-57 seq23 118 9e-22 seq35 96.9 3e-15 seq6 89.7 4e-13 >seq328 Length=165906 Score = 235 bits (260), Expect = 5e-57 Identities = 1031/1608 (64%), Gaps = 59/1608 (4%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||| || ||||| || ||||||| || || || ||||| ||||||||||| || Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349 Query 130466 GTTTTGAGTCCAATTTTGT--GTCCATAATTGT--GGATGCTGCACATTGTTTGGTAATT 130521 ||||| |||||| ||| | | || ||| ||||| || | || ||| || Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGT----CAATTTTCCGTAGTT 107293 Query 130522 GGGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579 || | ||||| ||| || | | ||| || |||||||||||| || || || || Sbjct 107292 AGGCTCGGCCACATGAACAT--TAAACGACTGACTTTGATCAATAAATGCACCTCTATCA 107235 Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 |||||||| | | ||| |||| | || ||||| | || || || ||||| | | Sbjct 107234 GCAGCCATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGA 107175 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 | | || ||| || |||| ||||| | || | | | || |||| || Sbjct 107174 ACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTT 107115 Query 130700 CGCATACTTTTATCGTACAA-TCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAAT 130758 |||| | ||| | || ||||| || | | ||| ||| ||||||| ||| | Sbjct 107114 TTCATATCATCATCCCATAAGTCCAA-CTCTGTTAAATCCCTTAATAAATGATGATTGAC 107056 Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 | |||||| ||||||| | || ||||| || || || | || | ||||| || Sbjct 107055 CACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAA 106996 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878 |||||||| || || | ||||| || |||| ||| || ||||| || ||||| | Sbjct 106995 TGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAA 106936 Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938 ||||| | || ||||| | | || | | |||| | | ||||||||||| Sbjct 106935 CGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA--- 106879 Query 130939 GGTAGGTTTGACATTGTTCC-ACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 || ||| || || ||| |||||||| ||||||| ||||| || || | ||||| Sbjct 106878 -GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTC 106820 Query 130998 ATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTC 131057 || | | |||||| || | ||| || || |||||||| ||||| | Sbjct 106819 CTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCC 106760 Query 131058 CGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAG 131117 | ||||||| ||||| ||||||| ||||| | | |||| | || || || | Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700 Query 131118 GAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTAT 131177 |||| ||||| ||| |||||||| |||| ||| || | || | || | || | || Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640 Query 131178 GTTTTAAATTACATTTACGCGAACATTCGGT---GGGATAAAGGTTAATGTCAATTATTT 131234 | ||||||| |||| | | ||| | ||| ||| ||| ||||| ||||||| Sbjct 106639 GCCTTAAATTGGATTT---CTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTT 106583 Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGC 131294 | || | ||| | ||| ||| || || ||| ||||| | ||||||||| || Sbjct 106582 TATTAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTT 106523 Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTT 131354 |||| | ||||||| || | ||||| || | ||| ||||| || | | Sbjct 106522 ---TTTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCT 106466 Query 131355 CGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCA 131414 | ||| | | |||| ||||||||| | || |||||||||| || || ||||| | Sbjct 106465 CATCAGGTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAA 106406 Query 131415 AATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCC 131473 ||||||||||||||| || ||| ||| | ||||| | | |||||| || | || Sbjct 106405 CATTTTGTTGATTGCTCTTTCTATT-ACAGGAATCCTTAAAAAGCATGTATGGGTTACCA 106347 Query 131474 GTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTG 131533 ||||| ||||| | ||| |||||| | || | ||| | || || | || Sbjct 106346 GTTTCAACTTGCGATTCTATAATG----GCAAACCATAACGA-CTGAGCTTTCACTGTTC 106292 Query 131534 TATTGGC-CG--CGTTTTTCGTAATTTTCGTACAACGTT--TCAAAGTTTTGG--CCAAA 131586 ||| || || | | || | | ||| | || ||| ||||| |||| | ||||| Sbjct 106291 GATTAGCACGTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAA 106232 Query 131587 CGAACT----GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642 | | || ||||| ||||||| |||||||| | |||||| | || Sbjct 106231 C-ATCTTGAAGTCCA-----GGACATTTATGTGGACACATCAACGACCAGTTTTCATTTG 106178 Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702 |||||| || ||||| || | ||| || | |||||| || || || ||||| | ||| Sbjct 106177 CTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTC 106118 Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762 || |||||| | || | || |||| | | |||||| || |||| || | ||||| Sbjct 106117 GGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCC 106058 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGAC 131819 |||| || ||||| | || | || || | || ||| || |||| ||||| | Sbjct 106057 AGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATC 105998 Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC 131879 | ||| || || |||| | | ||| || | || || || | | || || || | Sbjct 105997 GTGCCACATTATTAAATACTCTTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTC 105938 Query 131880 TCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGT 131939 ||| | |||| ||||| | || ||||| || |||||||| || || | Sbjct 105937 CACATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAATTCCACCCGCTG 105878 Query 131940 ATTTAGAGATTAGTGCGCATTTGGTTAGAGTG--TTATAGATACCTTC 131985 |||| || || | ||| |||| ||| | || ||| | |||||||| Sbjct 105877 ATTTGGAAATCATTGCACATT--GTTCAACTGATTTAAAAATACCTTC 105832 >seq23 Length=1278451 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| | ||||| || || || || |||||||| Sbjct 1263179 CCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 1263238 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | ||||||||||| || || || || Sbjct 1263239 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263298 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | |||| ||||| Sbjct 1263299 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263357 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||||||| ||||||||||| |||||| Sbjct 1263358 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263406 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| | || || || || || || |||||||| Sbjct 1263407 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263466 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | ||||||||||| || || || || Sbjct 1263467 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263526 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | |||| ||||| Sbjct 1263527 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263585 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||||||| ||||||||||| |||||| Sbjct 1263586 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263634 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| | || || || || || || |||||||| Sbjct 1263635 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263694 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | ||||||||||| || || || || Sbjct 1263695 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263754 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | |||| ||||| Sbjct 1263755 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263813 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||||||| ||||||||||| |||||| Sbjct 1263814 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263862 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| | || || || || || || |||||||| Sbjct 1263863 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263922 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | ||||||||||| || || || || Sbjct 1263923 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263982 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | |||| ||||| Sbjct 1263983 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1264041 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| |||||||| ||||||||||| |||||| Sbjct 1264042 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1264090 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| | || || || || || || |||||||| Sbjct 1264091 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1264150 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || |||||| | ||||||||||| || || || || Sbjct 1264151 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1264210 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | |||| ||||| Sbjct 1264211 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1264269 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | |||||| |||| |||||||||||||| ||||| Sbjct 1264270 CTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317 >seq35 Length=832945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | |||||||||||||| || || || || || || || ||||||||| Sbjct 773422 GCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 773481 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || |||| || ||||| || ||||| | || | |||||| ||||| || || Sbjct 773482 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGG 773541 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| || | | || | ||||| | || || || Sbjct 773542 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 773601 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| ||||| || ||||| ||||| ||||| Sbjct 773602 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649 >seq6 Length=3104374 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| | Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || |||||| | || |||||||| ||||| || || Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | || | ||||| | || || || Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || |||||||||||||| |||||||| Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424924378851720