Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq328 235 5e-57
seq23 118 9e-22
seq35 96.9 3e-15
seq6 89.7 4e-13
>seq328
Length=165906
Score = 235 bits (260), Expect = 5e-57
Identities = 1031/1608 (64%), Gaps = 59/1608 (4%)
Strand=Plus/Minus
Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465
|| ||||| || ||||| || ||||||| || || || ||||| ||||||||||| ||
Sbjct 107408 TTGTCGACTGTAAATTGTATTGCATTGGCAGCTGGTTTTGTGCGTAAATAATACATTCCG 107349
Query 130466 GTTTTGAGTCCAATTTTGT--GTCCATAATTGT--GGATGCTGCACATTGTTTGGTAATT 130521
||||| |||||| ||| | | || ||| ||||| || | || ||| ||
Sbjct 107348 GTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGT----CAATTTTCCGTAGTT 107293
Query 130522 GGGTTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCT 130579
|| | ||||| ||| || | | ||| || |||||||||||| || || || ||
Sbjct 107292 AGGCTCGGCCACATGAACAT--TAAACGACTGACTTTGATCAATAAATGCACCTCTATCA 107235
Query 130580 GCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639
|||||||| | | ||| |||| | || ||||| | || || || ||||| | |
Sbjct 107234 GCAGCCATCTTAATTGTGGATTTAACTGAAATTTCCCACACTGTTTTATAAAGATCGCGA 107175
Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699
| | || ||| || |||| ||||| | || | | | || |||| ||
Sbjct 107174 ACATTTTGGGGAATAGTTTCAATATTTTGAATGGAGCCCCTACTTGAAATTATTTTATTT 107115
Query 130700 CGCATACTTTTATCGTACAA-TCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAAT 130758
|||| | ||| | || ||||| || | | ||| ||| ||||||| ||| |
Sbjct 107114 TTCATATCATCATCCCATAAGTCCAA-CTCTGTTAAATCCCTTAATAAATGATGATTGAC 107056
Query 130759 GATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818
| |||||| ||||||| | || ||||| || || || | || | ||||| ||
Sbjct 107055 CACTTGAAATTCACCAGATAATACTCGTCTCGTATATATATTAGTTGTATATGGTTCGAA 106996
Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878
|||||||| || || | ||||| || |||| ||| || ||||| || ||||| |
Sbjct 106995 TGATTCGTTATTACCCATAATTTGGGCAGTAGATGCTGTAGGCATAGGAGCTACTAACAA 106936
Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938
||||| | || ||||| | | || | | |||| | | |||||||||||
Sbjct 106935 CGAATTCCTAATTCCGTGTTTTTTAATGTCTTCTTTCAGGTTTTGCCAATCCCATAA--- 106879
Query 130939 GGTAGGTTTGACATTGTTCC-ACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997
|| ||| || || ||| |||||||| ||||||| ||||| || || | |||||
Sbjct 106878 -GTTCGTTGGAGTTTTATCCCACATATCATATTGTAGAATGCCATTGCTTACAGGACTTC 106820
Query 130998 ATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTC 131057
|| | | |||||| || | ||| || || |||||||| ||||| |
Sbjct 106819 CTTTATAGGTTTCGTACGGACCAAATATTTGAGAAAGTTCACAACTAGCTTCTAAAGCCC 106760
Query 131058 CGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAG 131117
| ||||||| ||||| ||||||| ||||| | | |||| | || || || |
Sbjct 106759 CAAAATAAATAGTTTCAAATATTTGTTGGTTTAAAAGACTAGCTTCTTCACTTTCATAGG 106700
Query 131118 GAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTAT 131177
|||| ||||| ||| |||||||| |||| ||| || | || | || | || | ||
Sbjct 106699 GAAAACGCATTAGAATTAAAGCGTCAGCGAAACCTTGAACACCTATACCAATTGGACGAT 106640
Query 131178 GTTTTAAATTACATTTACGCGAACATTCGGT---GGGATAAAGGTTAATGTCAATTATTT 131234
| ||||||| |||| | | ||| | ||| ||| ||| ||||| |||||||
Sbjct 106639 GCCTTAAATTGGATTT---CTTAGCTTCTGGCAAGGGGTAATAGTTGATGTCTATTATTT 106583
Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGC 131294
| || | ||| | ||| ||| || || ||| ||||| | ||||||||| ||
Sbjct 106582 TATTAAGATTTTTAGCAACAGTTTTGGTTACATCTTTTAATTTTTTGAAATCAAATGTTT 106523
Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTT 131354
|||| | ||||||| || | ||||| || | ||| ||||| || | |
Sbjct 106522 ---TTTCTGGTGTTACAAACATGTTAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCT 106466
Query 131355 CGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCA 131414
| ||| | | |||| ||||||||| | || |||||||||| || || ||||| |
Sbjct 106465 CATCAGGTGCAGAGTACTCAACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAA 106406
Query 131415 AATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCC 131473
||||||||||||||| || ||| ||| | ||||| | | |||||| || | ||
Sbjct 106405 CATTTTGTTGATTGCTCTTTCTATT-ACAGGAATCCTTAAAAAGCATGTATGGGTTACCA 106347
Query 131474 GTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTG 131533
||||| ||||| | ||| |||||| | || | ||| | || || | ||
Sbjct 106346 GTTTCAACTTGCGATTCTATAATG----GCAAACCATAACGA-CTGAGCTTTCACTGTTC 106292
Query 131534 TATTGGC-CG--CGTTTTTCGTAATTTTCGTACAACGTT--TCAAAGTTTTGG--CCAAA 131586
||| || || | | || | | ||| | || ||| ||||| |||| | |||||
Sbjct 106291 GATTAGCACGTCCCTCTTGCTCATATTTGACATAAAGTTGCTCAAATTTTTCGCCCCAAA 106232
Query 131587 CGAACT----GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642
| | || ||||| ||||||| |||||||| | |||||| | ||
Sbjct 106231 C-ATCTTGAAGTCCA-----GGACATTTATGTGGACACATCAACGACCAGTTTTCATTTG 106178
Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702
|||||| || ||||| || | ||| || | |||||| || || || ||||| | |||
Sbjct 106177 CTTCAACCCGTTTCATGAAAAGATCGGGAATCCATAAAGCATAAAAAAGATCCCGTGCTC 106118
Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762
|| |||||| | || | || |||| | | |||||| || |||| || | |||||
Sbjct 106117 GGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAATTCAAAAACATCTGAATGCC 106058
Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGAC 131819
|||| || ||||| | || | || || | || ||| || |||| ||||| |
Sbjct 106057 AGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATC 105998
Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC 131879
| ||| || || |||| | | ||| || | || || || | | || || || |
Sbjct 105997 GTGCCACATTATTAAATACTCTTAGCATTGGAACTAATCCATTTGAAGTACCGTTCGTTC 105938
Query 131880 TCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGT 131939
||| | |||| ||||| | || ||||| || |||||||| || || |
Sbjct 105937 CACATATGGAAGTGCCTTTGGCACGAATACAATGAACATTAAGTCCAATTCCACCCGCTG 105878
Query 131940 ATTTAGAGATTAGTGCGCATTTGGTTAGAGTG--TTATAGATACCTTC 131985
|||| || || | ||| |||| ||| | || ||| | ||||||||
Sbjct 105877 ATTTGGAAATCATTGCACATT--GTTCAACTGATTTAAAAATACCTTC 105832
>seq23
Length=1278451
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||||||| | ||||| || || || || ||||||||
Sbjct 1263179 CCACCGCGGAGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAA 1263238
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 1263239 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263298
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | |||| |||||
Sbjct 1263299 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263357
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | |||||| |||||||| ||||||||||| ||||||
Sbjct 1263358 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263406
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||||||| | || || || || || || ||||||||
Sbjct 1263407 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263466
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 1263467 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263526
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | |||| |||||
Sbjct 1263527 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263585
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | |||||| |||||||| ||||||||||| ||||||
Sbjct 1263586 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263634
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||||||| | || || || || || || ||||||||
Sbjct 1263635 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263694
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 1263695 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263754
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | |||| |||||
Sbjct 1263755 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1263813
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | |||||| |||||||| ||||||||||| ||||||
Sbjct 1263814 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1263862
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||||||| | || || || || || || ||||||||
Sbjct 1263863 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1263922
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 1263923 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1263982
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | |||| |||||
Sbjct 1263983 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1264041
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || | |||||| |||||||| ||||||||||| ||||||
Sbjct 1264042 CTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCATA 1264090
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | |||| |||||||| | || || || || || || ||||||||
Sbjct 1264091 CCACCGCGGAGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1264150
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 1264151 AGAGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGG 1264210
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199
| ||||| || || ||||||| |||| | | || | ||||| | |||| |||||
Sbjct 1264211 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGC-TCAAC 1264269
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | |||||| |||| |||||||||||||| |||||
Sbjct 1264270 CTCCAAGGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 1264317
>seq35
Length=832945
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||| | |||||||||||||| || || || || || || || |||||||||
Sbjct 773422 GCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 773481
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| | || |||| || ||||| || ||||| | || | |||||| ||||| || ||
Sbjct 773482 CAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGG 773541
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || |||||| || | | || | ||||| | || || ||
Sbjct 773542 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGAC 773601
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||||| ||||| || ||||| ||||| |||||
Sbjct 773602 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 773649
>seq6
Length=3104374
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | ||||| || | || || || || || || ||||||||| |
Sbjct 2898480 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898421
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | || || ||||| || |||||| | || |||||||| ||||| || ||
Sbjct 2898420 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2898361
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || |||||| || | | || | ||||| | || || ||
Sbjct 2898360 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 2898301
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||||| || |||||||||||||| ||||||||
Sbjct 2898300 TCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 2898254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424924378851720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |