Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq328 98.7 1e-15 seq134 86.0 8e-12 >seq328 Length=165906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 221/328 (67%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || |||| |||||||||||| | |||||| || | || | | ||| || || || Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617 Query 111113 GTCT--CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 ||| ||| ||| ||| | || |||| || | | || |||||||| | |||| | | Sbjct 106616 -TCTGGCAAGGGG-TAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTT 106559 Query 111171 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 111230 | || | || | | ||||| ||||||| || | ||| | ||| || | Sbjct 106558 TGGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGT 106502 Query 111231 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 111290 ||| || ||||| || |||||||||||||| ||||||| | | |||||| | || Sbjct 106501 TAAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAA 106442 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 ||||||||||||| || | ||||| || || | ||| | ||| || ||||| | | Sbjct 106441 TTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTAT 106382 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGG 111378 | || | |||||| | |||||||| || Sbjct 106381 TACAGGAATCCTTAAAAAGCATGTATGG 106354 >seq134 Length=322322 Score = 86.0 bits (94), Expect = 8e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || || ||| | | || ||||| || ||||| | ||||| || | ||| ||||| Sbjct 20634 GTCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTT 20693 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 ||| || || |||| | ||||| || ||||| || ||| | | |||| || || | Sbjct 20694 GTTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGA-GGGAAACCTCGC 20752 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||||||||| || ||| | || || || | | | || ||| |||||||||| || Sbjct 20753 CGTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGC 20812 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | |||||| | |||| || || | ||| |||||||| |||| Sbjct 20813 GCTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCAT 20872 Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067 || ||| || || ||||||| Sbjct 20873 CCACCAGGCTGGGGATGGAGCGCT 20896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016809476000