Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq22 127 3e-24 seq8 114 2e-20 seq134 111 2e-19 seq328 100 4e-16 >seq22 Length=1073832 Score = 127 bits (140), Expect = 3e-24 Identities = 283/414 (68%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 14018 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076 || || || ||||| |||| | |||| || |||| | || ||| ||||||||||| Sbjct 979058 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 979000 Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136 ||||| || || || ||||| | ||| |||||| || ||||| || | | | Sbjct 978999 CGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTGGCCGCAATCAGGATCAC 978940 Query 14137 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 14196 ||| | | | ||||| || ||||| ||| || | || || | |||||| ||||| Sbjct 978939 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCGCG 978880 Query 14197 TTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255 ||| ||||| || || | | || |||| || || || |||||||||||||| | Sbjct 978879 TTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 978821 Query 14256 CGATGAAAACGATACATGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGCACTCTC 14314 | ||||| | || ||||| | |||| | | || | || || || ||||| | Sbjct 978820 CAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGCT-CGAACATGTCGCGCACACGG 978762 Query 14315 TTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 14373 || || |||||||||||||| || ||||| | | ||||| || | || ||| || Sbjct 978761 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 978703 Query 14374 GACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | ||||||||||||||| ||||| || ||||| ||||| || || || Sbjct 978702 CACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTTCCCTGTTCCCGG 978649 >seq8 Length=1553183 Score = 114 bits (126), Expect = 2e-20 Identities = 280/414 (68%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 14018 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076 || || || ||||| |||| | |||| || |||| | || ||| ||||||||||| Sbjct 973671 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 973729 Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136 ||||| || || || ||||| | ||| |||||| |||||||| || | | | Sbjct 973730 CGGGCGTAGCAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTCGCCGCAATCAGGATCAC 973789 Query 14137 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 14196 ||| | | | ||||| || ||||| ||| || | || || | |||||| || || Sbjct 973790 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCACG 973849 Query 14197 TTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255 ||| ||||| || || | ||| |||| || || || |||||||||||||| | Sbjct 973850 TTCGTCATTGCCACCGCCCAT-ACCGGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 973908 Query 14256 CGATGAAAACGATACATGGTT-GATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTC 14314 | ||||| | || ||||| | ||| | | ||| || || || ||||| | Sbjct 973909 CAATGAAGATAATGCATGGGGCGGCCTTCTTGCCCTG-TTCGAACATGTCGCGCACACGG 973967 Query 14315 TTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 14373 || || |||||||||||||| || ||||| | | ||||| || | || ||| || Sbjct 973968 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 974026 Query 14374 GACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | ||||||||||||||| ||||| | || || ||||| || || || Sbjct 974027 CACATTGGCTTCACCCGCGATGGCACGGGCCAACAGAGTTTTCCCTGTTCCCGG 974080 >seq134 Length=322322 Score = 111 bits (122), Expect = 2e-19 Identities = 298/448 (67%), Gaps = 12/448 (3%) Strand=Plus/Plus Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944 || ||||||||||| |||| ||||||||| |||||||| || | | |||| ||| | Sbjct 20455 CCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 20514 Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCGGA 179004 ||| || ||| | || ||||| | || | |||| || |||||| || Sbjct 20515 AATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 20574 Query 179005 TCAAAGATTTTACGAGCATCCCTGGTGAGTTT--TGTGAAGATGTACCT--CGTTTGAGA 179060 | |||| | | || || || || | |||||| ||||| | || | | Sbjct 20575 TGGTAGATG--AGGCGCGTCAGCGGCGACATCAATGTGAAAATGTAACGAGCGCTGG--- 20629 Query 179061 CGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 179119 | || || ||||| ||| | | || || || || ||||| | ||||| || | |||| Sbjct 20630 CACAGTCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGA 20689 Query 179120 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACT 179178 | ||||| || || | ||||| | ||||| || || || || ||| | |||||| || Sbjct 20690 TGTTGTTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACC 20748 Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238 || ||||| ||||| |||||| | || ||||| | | | || ||| |||||||||| | Sbjct 20749 TCGCCGTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACC 20808 Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 || |||| ||| | |||||| | |||| ||||| | ||| ||||||||| Sbjct 20809 TCGCGCTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGG 20868 Query 179299 CCGTCGGCCATGTGCGCGATGGAACGCT 179326 || || ||| | | |||||| |||| Sbjct 20869 CCATCCACCAGGCTGGGGATGGAGCGCT 20896 >seq328 Length=165906 Score = 100 bits (110), Expect = 4e-16 Identities = 361/559 (65%), Gaps = 7/559 (1%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || |||| |||||| ||||| | |||||||| ||||| || | ||| || ||| ||| Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617 Query 118587 GTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| || ||| ||| | || | || || | |||| |||||||| | ||| || Sbjct 106616 -TCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTT 106558 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705 || | || | | |||| | ||||||| | | ||| | ||| || | Sbjct 106557 GGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGTT 106501 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 ||| || ||||| || | ||| || |||| | ||||||| ||| |||||| | ||| Sbjct 106500 AAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAAT 106441 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| || || || || | ||||| ||||| | || | |||||| |||| | || Sbjct 106440 TTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATT 106381 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 ||| | |||||| ||||||||||||| | || || || ||| || | | ||| || Sbjct 106380 ACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGC 106321 Query 118886 CTTCCA-GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTG 118944 ||| || | | |||| ||| || || || || ||||||| ||| || || Sbjct 106320 AAACCATAACGACTG-AGCTTTCACTGTTCGATTAGCACGTCCCTCTTGCTCATATTTGA 106262 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 119004 || || ||||| | ||| ||| | ||| || || || |||| ||| | Sbjct 106261 CATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGAC 106202 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 | | | ||||| | || | |||||||| |||||||| || || || ||||| | Sbjct 106201 ACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATA 106142 Query 119065 GCGCCGAGAAGAGATCCCG 119083 || | || |||||||| Sbjct 106141 AAGCATAAAAAAGATCCCG 106123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618420241598600