Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq22 127 3e-24
seq8 114 2e-20
seq134 111 2e-19
seq328 100 4e-16
>seq22
Length=1073832
Score = 127 bits (140), Expect = 3e-24
Identities = 283/414 (68%), Gaps = 8/414 (2%)
Strand=Plus/Minus
Query 14018 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076
|| || || ||||| |||| | |||| || |||| | || ||| |||||||||||
Sbjct 979058 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 979000
Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136
||||| || || || ||||| | ||| |||||| || ||||| || | | |
Sbjct 978999 CGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTGGCCGCAATCAGGATCAC 978940
Query 14137 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 14196
||| | | | ||||| || ||||| ||| || | || || | |||||| |||||
Sbjct 978939 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCGCG 978880
Query 14197 TTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255
||| ||||| || || | | || |||| || || || |||||||||||||| |
Sbjct 978879 TTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 978821
Query 14256 CGATGAAAACGATACATGGTTGAT-TTTCACGGGCAACTTCAAAGATATCTCGCACTCTC 14314
| ||||| | || ||||| | |||| | | || | || || || ||||| |
Sbjct 978820 CAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGCT-CGAACATGTCGCGCACACGG 978762
Query 14315 TTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 14373
|| || |||||||||||||| || ||||| | | ||||| || | || ||| ||
Sbjct 978761 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 978703
Query 14374 GACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| || | ||||||||||||||| ||||| || ||||| ||||| || || ||
Sbjct 978702 CACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTTTTCCCTGTTCCCGG 978649
>seq8
Length=1553183
Score = 114 bits (126), Expect = 2e-20
Identities = 280/414 (68%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 14018 ATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACC 14076
|| || || ||||| |||| | |||| || |||| | || ||| |||||||||||
Sbjct 973671 ATTTTTTCACGACCTGACACATCCGGGTTCGG-CACGACAACCTGACGGTCAAAGCGACC 973729
Query 14077 TGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGAT 14136
||||| || || || ||||| | ||| |||||| |||||||| || | | |
Sbjct 973730 CGGGCGTAGCAGAGCAGGATCAAGCACGTCAGGGCGGTTGGTCGCCGCAATCAGGATCAC 973789
Query 14137 GCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCG 14196
||| | | | ||||| || ||||| ||| || | || || | |||||| || ||
Sbjct 973790 GCCTTCGTTGCTTTCAAACCCGTCCATTTCAACCAGCATCTGGTTCAGGGTTTGCTCACG 973849
Query 14197 TTCATCATTCGCAG-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCAT 14255
||| ||||| || || | ||| |||| || || || |||||||||||||| |
Sbjct 973850 TTCGTCATTGCCACCGCCCAT-ACCGGCACCACGATGGCGGCCAACGGCGTCAATTTCGT 973908
Query 14256 CGATGAAAACGATACATGGTT-GATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTC 14314
| ||||| | || ||||| | ||| | | ||| || || || ||||| |
Sbjct 973909 CAATGAAGATAATGCATGGGGCGGCCTTCTTGCCCTG-TTCGAACATGTCGCGCACACGG 973967
Query 14315 TTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGG 14373
|| || |||||||||||||| || ||||| | | ||||| || | || ||| ||
Sbjct 973968 GAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAACCGGAA-ATGGTGAAGAACGG 974026
Query 14374 GACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427
|| || | ||||||||||||||| ||||| | || || ||||| || || ||
Sbjct 974027 CACATTGGCTTCACCCGCGATGGCACGGGCCAACAGAGTTTTCCCTGTTCCCGG 974080
>seq134
Length=322322
Score = 111 bits (122), Expect = 2e-19
Identities = 298/448 (67%), Gaps = 12/448 (3%)
Strand=Plus/Plus
Query 178885 CCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 178944
|| ||||||||||| |||| ||||||||| |||||||| || | | |||| ||| |
Sbjct 20455 CCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 20514
Query 178945 TCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCGGA 179004
||| || ||| | || ||||| | || | |||| || |||||| ||
Sbjct 20515 AATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 20574
Query 179005 TCAAAGATTTTACGAGCATCCCTGGTGAGTTT--TGTGAAGATGTACCT--CGTTTGAGA 179060
| |||| | | || || || || | |||||| ||||| | || | |
Sbjct 20575 TGGTAGATG--AGGCGCGTCAGCGGCGACATCAATGTGAAAATGTAACGAGCGCTGG--- 20629
Query 179061 CGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 179119
| || || ||||| ||| | | || || || || ||||| | ||||| || | ||||
Sbjct 20630 CACAGTCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGA 20689
Query 179120 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACT 179178
| ||||| || || | ||||| | ||||| || || || || ||| | |||||| ||
Sbjct 20690 TGTTGTTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTG-GAGGGAAACC 20748
Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238
|| ||||| ||||| |||||| | || ||||| | | | || ||| |||||||||| |
Sbjct 20749 TCGCCGTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACC 20808
Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298
|| |||| ||| | |||||| | |||| ||||| | ||| |||||||||
Sbjct 20809 TCGCGCTTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGG 20868
Query 179299 CCGTCGGCCATGTGCGCGATGGAACGCT 179326
|| || ||| | | |||||| ||||
Sbjct 20869 CCATCCACCAGGCTGGGGATGGAGCGCT 20896
>seq328
Length=165906
Score = 100 bits (110), Expect = 4e-16
Identities = 361/559 (65%), Gaps = 7/559 (1%)
Strand=Plus/Minus
Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586
|| |||| |||||| ||||| | |||||||| ||||| || | ||| || ||| |||
Sbjct 106676 TCAGCGAAACCTTGAACACCTATACCAATTGGACGATGCCTTAAATTGGATTTCTTAGCT 106617
Query 118587 GTCTC-CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645
||| || ||| ||| | || | || || | |||| |||||||| | ||| ||
Sbjct 106616 -TCTGGCAAGGGGTAATAGTTGATGTCTATTATTTTATTAAGATTTTTAGCAACAGTTTT 106558
Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705
|| | || | | |||| | ||||||| | | ||| | ||| || |
Sbjct 106557 GGTTACATCTTTTAATTTTTTGAAATCAAATGTTT---TTTCTGGTGTTACAAACATGTT 106501
Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765
||| || ||||| || | ||| || |||| | ||||||| ||| |||||| | |||
Sbjct 106500 AAGTGCAATTGAAGCTAAATTGCAAACAGCGATCTCATCAGGTGCAGAGTACTCAACAAT 106441
Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825
||| || || || || | ||||| ||||| | || | |||||| |||| | ||
Sbjct 106440 TTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATT 106381
Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885
||| | |||||| ||||||||||||| | || || || ||| || | | ||| ||
Sbjct 106380 ACAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCAACTTGCGATTCTATAATGGC 106321
Query 118886 CTTCCA-GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTG 118944
||| || | | |||| ||| || || || || ||||||| ||| || ||
Sbjct 106320 AAACCATAACGACTG-AGCTTTCACTGTTCGATTAGCACGTCCCTCTTGCTCATATTTGA 106262
Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 119004
|| || ||||| | ||| ||| | ||| || || || |||| ||| |
Sbjct 106261 CATAAAGTTGCTCAAATTTTTCGCCCCAAACATCTTGAAGTCCAGGACATTTATGTGGAC 106202
Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064
| | | ||||| | || | |||||||| |||||||| || || || ||||| |
Sbjct 106201 ACATCAACGACCAGTTTTCATTTGCTTCAACCCGTTTCATGAAAAGATCGGGAATCCATA 106142
Query 119065 GCGCCGAGAAGAGATCCCG 119083
|| | || ||||||||
Sbjct 106141 AAGCATAAAAAAGATCCCG 106123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618420241598600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |