Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq328 134 2e-26 seq111 113 5e-20 seq22 104 3e-17 seq134 98.7 1e-15 >seq328 Length=165906 Score = 134 bits (148), Expect = 2e-26 Identities = 377/572 (66%), Gaps = 9/572 (2%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || ||||| || | ||| | |||||||| ||||| |||||||| | ||||| | | | Sbjct 106123 CGGGATCTTTTTTATGCTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAAT 106182 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 | || ||||| | | |||||| | || ||||| || |||| ||| || Sbjct 106183 GAAAACTGGTCGTTGATGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAA 106242 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875 | ||||| ||||| || || ||| |||| || || || | | || ||| | Sbjct 106243 AAATTTGAGCAACTTTATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAA 106302 Query 104876 GCTGCCGATGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934 ||| | | || ||| || ||| | | || ||| || ||||||| |||||||| Sbjct 106303 GCT-CAGTCGTTATGGTTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACAT 106361 Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994 ||||| || || ||||||| |||||| |||||| | ||| | || || || | Sbjct 106362 GCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATG 106421 Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054 ||| | ||||||||||| | || | | | ||||||| ||||| || || Sbjct 106422 CAGTAATTTATGTACAGAAATTGTTGAGTACTCTGCACCTGATGAGATCGCTGTTTGCAA 106481 Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114 | || ||||| || || || || ||| ||||| ||| |||||||||| | Sbjct 106482 TTTAGCTTCAATTGCACTTAACATGTTTGTAACACCAGA---AAAAACATTTGATTTCAA 106538 Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174 |||| | | || || || |||||||| | ||||| || || | | | || || | || Sbjct 106539 AAAATTAAAAGATGTAACCAAAACTGTTGCTAAAAATCTTAATAAAATAATAGACATCAA 106598 Query 105175 TTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232 | ||||||| ||| ||| ||| ||||| ||| | || || |||||||||||| | Sbjct 106599 CTATTACCCC-TTGCCAGAA-GCTAAGAAATCCAATTTAAGGCATCGTCCAATTGGTATA 106656 Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 |||||||| ||| |||| || | || ||||| Sbjct 106657 GGTGTTCAAGGTTTCGCTGACGCTTTAATTCT 106688 >seq111 Length=362587 Score = 113 bits (124), Expect = 5e-20 Identities = 291/441 (66%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| | | || ||||| || || || ||||||||| || ||| Sbjct 244821 CTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTT 244762 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | || | |||||| |||||||| || |||||||| ||||| |||||||||||| Sbjct 244761 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 244702 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTAT 94975 ||| |||||||||||||| || |||||| || ||||||||| | | || | | Sbjct 244701 GCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTCATGTACCAGCATCT 244642 Query 94976 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 95035 | | | |||| | ||| ||| | || ||| ||| || || || || | Sbjct 244641 GGTGCAGCGTCCCAA-GCGGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCG 244583 Query 95036 AGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAA 95095 || ||| ||| | || ||||| || ||| | | || || ||||| | | | Sbjct 244582 AGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCA 244523 Query 95096 TGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA 95155 |||| | || ||||| | ||| | ||| | || ||| | || |||| ||| | | Sbjct 244522 TGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGA 244463 Query 95156 TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAA 95215 | | ||| | |||||||| || |||||||| | || || ||||| ||||||| Sbjct 244462 TCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAA 244403 Query 95216 ACTTCTTCGAAAAGAGGGTTG 95236 ||||||| || || | ||||| Sbjct 244402 ACTTCTTTGAGAAAAAGGTTG 244382 >seq22 Length=1073832 Score = 104 bits (114), Expect = 3e-17 Identities = 254/375 (68%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||| ||||||||||| || || || || || |||||| | ||| ||| || || Sbjct 979017 CTGACGGTCAAAGCGACCCGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 978958 Query 9580 CGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637 || || || | | | ||| ||| | | ||||| || ||||| || || | Sbjct 978957 GGCCGCAATCAGGATCACGCCTTCGTTGC--TTTCAAACCCGTCCATTTCAACCAGCATC 978900 Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTT 9696 ||||| | ||||| || ||||| ||||| | || | | || |||| || || Sbjct 978899 TGGTTCAGGGTTTGCTCGCGTTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCG 978841 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA-TTTTCGCGAGCGACTT 9755 || ||||| ||||| || |||||||||| |||||||| | |||| | | | | Sbjct 978840 GCCAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGC-T 978782 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 | || | || || ||||| ||||| ||||| |||||||| || ||||||| | Sbjct 978781 CGAACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAAC 978722 Query 9816 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 ||||| || | || ||| || ||||| | ||||||||| ||||| ||||| || || || Sbjct 978721 CGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTT 978663 Query 9875 TTACCCGTACCTGGC 9889 || || || || ||| Sbjct 978662 TTCCCTGTTCCCGGC 978648 >seq134 Length=322322 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| || ||| | | || ||||| |||||||| | |||||| || | ||||| ||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || || || | ||||| | |||| || || || || | ||| || || || ||| Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 |||||||| || | |||| || || | | | || ||| ||||| |||| ||| | Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697 ||| || | |||||| | | |||| |||||||| || |||||||| |||||| Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874 Query 168698 GCCATGTGTGCGATAGAACGCT 168719 ||| | | ||| || |||| Sbjct 20875 ACCAGGCTGGGGATGGAGCGCT 20896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246692379400