Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq328 134 2e-26
seq111 113 5e-20
seq22 104 3e-17
seq134 98.7 1e-15
>seq328
Length=165906
Score = 134 bits (148), Expect = 2e-26
Identities = 377/572 (66%), Gaps = 9/572 (2%)
Strand=Plus/Plus
Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755
|| ||||| || | ||| | |||||||| ||||| |||||||| | ||||| | | |
Sbjct 106123 CGGGATCTTTTTTATGCTTTATGGATTCCCGATCTTTTCATGAAACGGGTTGAAGCAAAT 106182
Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815
| || ||||| | | |||||| | || ||||| || |||| ||| ||
Sbjct 106183 GAAAACTGGTCGTTGATGTGTCCACATAAATGTCCTGGACTTCAAGATGTTTGGGGCGAA 106242
Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875
| ||||| ||||| || || ||| |||| || || || | | || ||| |
Sbjct 106243 AAATTTGAGCAACTTTATGTCAAATATGAGCAAGAGGGACGTGCTAATCGAACAGTGAAA 106302
Query 104876 GCTGCCGATGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACAT 104934
||| | | || ||| || ||| | | || ||| || ||||||| ||||||||
Sbjct 106303 GCT-CAGTCGTTATGGTTTGCCATTATAGAATCGCAAGTTGAAACTGGTAACCCATACAT 106361
Query 104935 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 104994
||||| || || ||||||| |||||| |||||| | ||| | || || || |
Sbjct 106362 GCTTTTTAAGGATTCCTGTAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATG 106421
Query 104995 TTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 105054
||| | ||||||||||| | || | | | ||||||| ||||| || ||
Sbjct 106422 CAGTAATTTATGTACAGAAATTGTTGAGTACTCTGCACCTGATGAGATCGCTGTTTGCAA 106481
Query 105055 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 105114
| || ||||| || || || || ||| ||||| ||| |||||||||| |
Sbjct 106482 TTTAGCTTCAATTGCACTTAACATGTTTGTAACACCAGA---AAAAACATTTGATTTCAA 106538
Query 105115 AAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAA 105174
|||| | | || || || |||||||| | ||||| || || | | | || || | ||
Sbjct 106539 AAAATTAAAAGATGTAACCAAAACTGTTGCTAAAAATCTTAATAAAATAATAGACATCAA 106598
Query 105175 TTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 105232
| ||||||| ||| ||| ||| ||||| ||| | || || |||||||||||| |
Sbjct 106599 CTATTACCCC-TTGCCAGAA-GCTAAGAAATCCAATTTAAGGCATCGTCCAATTGGTATA 106656
Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264
|||||||| ||| |||| || | || |||||
Sbjct 106657 GGTGTTCAAGGTTTCGCTGACGCTTTAATTCT 106688
>seq111
Length=362587
Score = 113 bits (124), Expect = 5e-20
Identities = 291/441 (66%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
|||||| ||||| | | || ||||| || || || ||||||||| || |||
Sbjct 244821 CTTTGCCGAGCGTATTATTGCCTTTGCAGCCGTGGAAGGAATCTTCTTCAGCGGCAGCTT 244762
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
| | || | |||||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct 244761 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGA 244702
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTAT 94975
||| |||||||||||||| || |||||| || ||||||||| | | || | |
Sbjct 244701 GCTGATCTCTCGTGACGAAGGTCTCCACTGCGACTTTGCGGTGCTCATGTACCAGCATCT 244642
Query 94976 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 95035
| | | |||| | ||| ||| | || ||| ||| || || || || |
Sbjct 244641 GGTGCAGCGTCCCAA-GCGGGAGCGCATTATTGAGATCATTAGGGATGCTGTCGAAATCG 244583
Query 95036 AGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAA 95095
|| ||| ||| | || ||||| || ||| | | || || ||||| | | |
Sbjct 244582 AGCAAGAGTTCCTCACCGAAGCCCTGCCCTGCAATTTGATTGGCATGAACTGCGTCCTCA 244523
Query 95096 TGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA 95155
|||| | || ||||| | ||| | ||| | || ||| | || |||| ||| | |
Sbjct 244522 TGTCCCAGTACATTGAATTTGTCGCCGATCGTCTGCTGATGGAGCTCGGTGTGGGTAAGA 244463
Query 95156 TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAA 95215
| | ||| | |||||||| || |||||||| | || || ||||| |||||||
Sbjct 244462 TCTACAACACTAAGAATCCCTTCAGTTTCATGGATATGATCTCTCTGGACGGAAAGACAA 244403
Query 95216 ACTTCTTCGAAAAGAGGGTTG 95236
||||||| || || | |||||
Sbjct 244402 ACTTCTTTGAGAAAAAGGTTG 244382
>seq22
Length=1073832
Score = 104 bits (114), Expect = 3e-17
Identities = 254/375 (68%), Gaps = 10/375 (3%)
Strand=Plus/Minus
Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579
|| ||| ||||||||||| || || || || || |||||| | ||| ||| || ||
Sbjct 979017 CTGACGGTCAAAGCGACCCGGGCGCAGAAGAGCAGGATCAAGCACGTCAGGGCGGTTGGT 978958
Query 9580 CGCGGCGATGACAACAATACCT--GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9637
|| || || | | | ||| ||| | | ||||| || ||||| || || |
Sbjct 978957 GGCCGCAATCAGGATCACGCCTTCGTTGC--TTTCAAACCCGTCCATTTCAACCAGCATC 978900
Query 9638 TGGTTAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTT 9696
||||| | ||||| || ||||| ||||| | || | | || |||| || ||
Sbjct 978899 TGGTTCAGGGTTTGCTCGCGTTCGTCATTGCCACCGCCCATC-CCTGCACCACGATGGCG 978841
Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGA-TTTTCGCGAGCGACTT 9755
|| ||||| ||||| || |||||||||| |||||||| | |||| | | | |
Sbjct 978840 GCCAACGGCGTCAATTTCGTCAATGAAGATAATGCATGGGGCAGCTTTCTTGCCCTGC-T 978782
Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815
| || | || || ||||| ||||| ||||| |||||||| || ||||||| |
Sbjct 978781 CGAACATGTCGCGCACACGGGAAGCGCCAACACCCACAAACATTTCAACAAAGTCAGAAC 978722
Query 9816 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874
||||| || | || ||| || ||||| | ||||||||| ||||| ||||| || || ||
Sbjct 978721 CGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCGATGGCACGGGCCAGCAGGGTT 978663
Query 9875 TTACCCGTACCTGGC 9889
|| || || || |||
Sbjct 978662 TTCCCTGTTCCCGGC 978648
>seq134
Length=322322
Score = 98.7 bits (108), Expect = 1e-15
Identities = 179/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517
||||| || ||| | | || ||||| |||||||| | |||||| || | ||||| |||
Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694
Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577
|| || || | ||||| | |||| || || || || | ||| || || || |||
Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754
Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637
|||||||| || | |||| || || | | | || ||| ||||| |||| ||| |
Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814
Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697
||| || | |||||| | | |||| |||||||| || |||||||| ||||||
Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874
Query 168698 GCCATGTGTGCGATAGAACGCT 168719
||| | | ||| || ||||
Sbjct 20875 ACCAGGCTGGGGATGGAGCGCT 20896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583246692379400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |