Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq134 149 7e-31
seq85 111 2e-19
>seq134
Length=322322
Score = 149 bits (164), Expect = 7e-31
Identities = 303/450 (67%), Gaps = 0/450 (0%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
|| || ||||| ||||| || || |||| ||||| |||||| | || || | || ||
Sbjct 20455 CCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 20514
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
||||| | | | | || || || || ||||| |||| || || ||| ||
Sbjct 20515 AATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 20574
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| | | ||| ||| ||| | | |||||||||||||||| ||| |||
Sbjct 20575 TGGTAGATGAGGCGCGTCAGCGGCGACATCAATGTGAAAATGTAACGAGCGCTGGCACAG 20634
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
|||||||| || | | || |||||||| || || | |||||||| | ||| | ||||
Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
|| | ||| || |||| || |||| || || || || |||||| |||| ||
Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511
||||| || |||| | ||| |||||| | || | |||||| |||||||||| || |
Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| ||| ||||| ||||| | || ||||||||||| | ||||| || ||||||
Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874
Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTCC 117601
||| | ||||| || |||| | |||||
Sbjct 20875 ACCAGGCTGGGGATGGAGCGCTCGTTGTCC 20904
Score = 131 bits (144), Expect = 2e-25
Identities = 307/457 (67%), Gaps = 10/457 (2%)
Strand=Plus/Plus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
||||||| ||||||||||| || ||||| ||||||| |||||| | || || ||
Sbjct 20453 ATCCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 20512
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
|| ||||| | | || || ||||| || ||| | || | | || ||| |
Sbjct 20513 ACAATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 20572
Query 151994 GATCGAATATCCGTCGAGTCATAGG--AC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050
| | | | || | || |||| || || |||| ||||| ||||| || | |||||
Sbjct 20573 GGTGGTAGATGAGGCGCGTCAGCGGCGACATCAAT---GTGAAAATGTAACGAGCGCTGG 20629
Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110
| |||||||| || | || ||| || || ||||| || ||||| || | |||||
Sbjct 20630 CACAGTCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGA 20689
Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170
|||||| | ||| ||| | ||||| |||| |||||| || || ||| || | |
Sbjct 20690 TGTTGTTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCT 20749
Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230
| |||||||| || |||| | ||| || | | | || | || ||| |||||||||| |
Sbjct 20750 CGCCGTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCT 20809
Query 152231 C-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288
| || | ||| ||| ||||| |||| | | || ||||||||||| || || |
Sbjct 20810 CGCGCTTGTC--GTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAG 20867
Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325
|| ||||||| | || || || |||| | |||||
Sbjct 20868 GCCATCCACCAGGCTGGGGATGGAGCGCTCGTTGTCC 20904
>seq85
Length=575079
Score = 111 bits (122), Expect = 2e-19
Identities = 112/143 (78%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998
||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | |
Sbjct 501524 CAACAAACTCCCGCACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 501583
Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057
| || | ||| | |||||||||||| ||||| || ||| ||||| ||||| ||||||
Sbjct 501584 CACGCTGCAACATCATCCACATGGCCTCCACGTAGTCACTG-GCGTGTCCCCAATCGCGC 501642
Query 159058 TTGGCATCCATGTTCCCGAGCTC 159080
|| | ||||| ||| ||||||||
Sbjct 501643 TTCGAATCCAAGTTTCCGAGCTC 501665
Score = 98.7 bits (108), Expect = 1e-15
Identities = 112/147 (76%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543
|||| | |||||| || | ||||||||||| || ||| ||||||| | || | ||
Sbjct 501521 CCTCAACAAACTCCCGCACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 501580
Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603
|| || |||||||||| | ||||||||| | |||||||| ||||| ||||| ||
Sbjct 501581 TGTC-AC-GCTGCAACATCATCCACATGGCCTCCACGTAGTCACTGGCGTGTCCCCAATC 501638
Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630
|||||| | ||||| ||||||||||||
Sbjct 501639 GCGCTTCGAATCCAAGTTTCCGAGCTC 501665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547202764213000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |