Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq134 149 7e-31 seq85 111 2e-19 >seq134 Length=322322 Score = 149 bits (164), Expect = 7e-31 Identities = 303/450 (67%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || ||||| ||||| || || |||| ||||| |||||| | || || | || || Sbjct 20455 CCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 20514 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | | | || || || || ||||| |||| || || ||| || Sbjct 20515 AATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGG 20574 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| ||| ||| | | |||||||||||||||| ||| ||| Sbjct 20575 TGGTAGATGAGGCGCGTCAGCGGCGACATCAATGTGAAAATGTAACGAGCGCTGGCACAG 20634 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || | | || |||||||| || || | |||||||| | ||| | |||| Sbjct 20635 TCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 20694 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | ||| || |||| || |||| || || || || |||||| |||| || Sbjct 20695 TTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCTCGCCG 20754 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| || |||| | ||| |||||| | || | |||||| |||||||||| || | Sbjct 20755 TGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCTCGCGC 20814 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| ||||| ||||| | || ||||||||||| | ||||| || |||||| Sbjct 20815 TTGTCGTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAGGCCATCC 20874 Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTCC 117601 ||| | ||||| || |||| | ||||| Sbjct 20875 ACCAGGCTGGGGATGGAGCGCTCGTTGTCC 20904 Score = 131 bits (144), Expect = 2e-25 Identities = 307/457 (67%), Gaps = 10/457 (2%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 ||||||| ||||||||||| || ||||| ||||||| |||||| | || || || Sbjct 20453 ATCCGGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 20512 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | | || || ||||| || ||| | || | | || ||| | Sbjct 20513 ACAATGGCTCGATCCTCTGGCCATCATCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 20572 Query 151994 GATCGAATATCCGTCGAGTCATAGG--AC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 | | | | || | || |||| || || |||| ||||| ||||| || | ||||| Sbjct 20573 GGTGGTAGATGAGGCGCGTCAGCGGCGACATCAAT---GTGAAAATGTAACGAGCGCTGG 20629 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | |||||||| || | || ||| || || ||||| || ||||| || | ||||| Sbjct 20630 CACAGTCCTTGCCGCCCGTCAACCGAGTACCGAACTGACCGCGCGGCTCCAGCAAGTTGA 20689 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 |||||| | ||| ||| | ||||| |||| |||||| || || ||| || | | Sbjct 20690 TGTTGTTCGAGCCGACGTAGTTCTGGGCCAGATTCACGATAGTCATCTGGAGGGAAACCT 20749 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | |||||||| || |||| | ||| || | | | || | || ||| |||||||||| | Sbjct 20750 CGCCGTGGTGGTATGCCGACATCTCAGCCACGGAACCAGACAGCTGGGCCACCTTCACCT 20809 Query 152231 C-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 | || | ||| ||| ||||| |||| | | || ||||||||||| || || | Sbjct 20810 CGCGCTTGTC--GTTGCGCTTGAAGCAGGTGAACATGACCTTGCGCTGTCCCGGCTTGAG 20867 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || ||||||| | || || || |||| | ||||| Sbjct 20868 GCCATCCACCAGGCTGGGGATGGAGCGCTCGTTGTCC 20904 >seq85 Length=575079 Score = 111 bits (122), Expect = 2e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | | Sbjct 501524 CAACAAACTCCCGCACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 501583 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057 | || | ||| | |||||||||||| ||||| || ||| ||||| ||||| |||||| Sbjct 501584 CACGCTGCAACATCATCCACATGGCCTCCACGTAGTCACTG-GCGTGTCCCCAATCGCGC 501642 Query 159058 TTGGCATCCATGTTCCCGAGCTC 159080 || | ||||| ||| |||||||| Sbjct 501643 TTCGAATCCAAGTTTCCGAGCTC 501665 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/147 (76%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543 |||| | |||||| || | ||||||||||| || ||| ||||||| | || | || Sbjct 501521 CCTCAACAAACTCCCGCACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 501580 Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603 || || |||||||||| | ||||||||| | |||||||| ||||| ||||| || Sbjct 501581 TGTC-AC-GCTGCAACATCATCCACATGGCCTCCACGTAGTCACTGGCGTGTCCCCAATC 501638 Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630 |||||| | ||||| |||||||||||| Sbjct 501639 GCGCTTCGAATCCAAGTTTCCGAGCTC 501665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202764213000