Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 194 2e-44 seq134 192 7e-44 seq35 161 1e-34 seq234 152 6e-32 seq6 145 9e-30 seq111 95.1 1e-14 >seq23 Length=1278451 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || |||||||| || || || || ||||||||| || Sbjct 1263633 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263574 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 1263573 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263514 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||||| || | ||||| || Sbjct 1263513 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263454 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||| | || ||||||| |||||||| Sbjct 1263453 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263407 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || |||||||| || || || || ||||||||| || Sbjct 1263861 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263802 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 1263801 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263742 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||||| || | ||||| || Sbjct 1263741 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263682 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||| | || ||||||| |||||||| Sbjct 1263681 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263635 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || |||||||| || || || || ||||||||| || Sbjct 1264089 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1264030 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 1264029 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263970 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||||| || | ||||| || Sbjct 1263969 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263910 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||| | || ||||||| |||||||| Sbjct 1263909 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263863 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || |||||||| || || || || ||||||||| || Sbjct 1263405 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263346 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 1263345 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263286 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||||| || | ||||| || Sbjct 1263285 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263226 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || ||||| ||| | || ||||||| ||||||||| Sbjct 1263225 ATCCAGAAGGAGTCTACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGA 1263178 Score = 179 bits (198), Expect = 4e-40 Identities = 184/239 (77%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 27394 AATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAG 27453 |||| ||| | |||||| |||||||| || || | || ||||| || || || | ||| Sbjct 1264328 AATAATACAA-AATGCAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAG 1264270 Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513 |||||| || || | ||||| || ||||||| || || ||||||||||||||||| Sbjct 1264269 GTTGAGCCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATC 1264210 Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573 || ||||||||||||||||| || || || || ||||| || ||||||| ||||| || Sbjct 1264209 CCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTT 1264150 Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || |||| ||||| |||||||| ||| | || ||||||| |||||||| Sbjct 1264149 TCTGACTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1264091 >seq134 Length=322322 Score = 192 bits (212), Expect = 7e-44 Identities = 310/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || | ||| ||| ||||||||||| |||||||||||| || | | Sbjct 20896 AGCGCTCCATCCCCAGCCTGGTGGATGGCCTCAAGCCGGGACAGCGCAAGGTCATGTTCA 20837 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| ||||| ||| | | || |||||||||| |||||||| || | ||||| Sbjct 20836 CCTGCTTCAAGCGCAACGACAAGCGCGAGGTGAAGGTGGCCCAGCTGTCTGGTTCCGTGG 20777 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| |||| || ||||||||||||| || |||||| || || || || || | Sbjct 20776 CTGAGATGTCGGCATACCACCACGGCGAGGTTTCCCTCCAGATGACTATCGTGAATCTGG 20717 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||||| ||||| | || ||| | ||||| || ||||| || ||||| || | Sbjct 20716 CCCAGAACTACGTCGGCTCGAACAACATCAACTTGCTGGAGCCGCGCGGTCAGTTCGGTA 20657 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGC 32258 | ||| | | || |||||||| ||| ||| | |||||||| ||||| | |||| Sbjct 20656 CTCGGTTGACGGGCGGCAAGGACTGTGCCAGCGCTCGTTACATTTTCACATTGATGTCGC 20597 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 || ||||||| || | | |||| ||||||| || |||| ||||| | || Sbjct 20596 CGCT--GACGCGCCTCATCTACCACCCCCTGGACGATCCGCTGCTGGAGTACCAGACCGA 20539 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 ||| || ||| || ||||||| ||| || || | | |||||| | ||||||| Sbjct 20538 TGATGGCCAGAGGATCGAGCCATTGTGGTATCTGCCCATCATACCGATGGTTCTGGTGAA 20479 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 ||| || || |||||||| || || Sbjct 20478 CGGAGCCGAGGGCATCGGCACCGG 20455 >seq35 Length=832945 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||| ||| | Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773530 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || ||||| || ||||| | ||||| | | ||||| || Sbjct 773529 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773470 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || ||||||||||||||||| Sbjct 773469 ATCCAGAAGGAGTCGACTTTGCATTTGGTATTGCGTCTTCGCGGTGG 773423 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 773877 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 773818 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 773817 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773758 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| || Sbjct 773757 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773698 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || | || || |||||||| Sbjct 773697 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 773651 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 774105 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 774046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 774045 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773986 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| || Sbjct 773985 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773926 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || | || || |||||||| Sbjct 773925 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 773879 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 774333 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCCTCGAGGTCGAGCCCTCG 774274 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 774273 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 774214 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| || Sbjct 774213 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 774154 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||| | || | || || |||||||| Sbjct 774153 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 774107 >seq234 Length=227530 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| || | Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 10076 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || ||||||||||| || |||||||||||||| || Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| || ||| | || |||| || || ||| | || ||||| Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | ||| | || |||| ||||| ||||| Sbjct 9955 ATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGG 9909 >seq6 Length=3104374 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || || || |||||||| || || | ||||| ||| | Sbjct 2898253 AATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 2898312 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| || Sbjct 2898313 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 2898372 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || ||||||| || || || | ||||| || Sbjct 2898373 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 2898432 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | || || || ||||| Sbjct 2898433 CATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 2898480 >seq111 Length=362587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCAT-TCTGT-TCTATTTTCTGGCTAAAAAAGCGGG 64795 ||||||||||| ||||| | | | || | || || || || ||||| || ||||| | Sbjct 244790 GTGGAAGGAATCTTCTT--CAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTG 244733 Query 64796 GCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACC 64855 |||| ||||| |||||| | || || ||||||||||||||||| ||||| || |||||| Sbjct 244732 GCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACT 244673 Query 64856 AAGAATTTGCGGT 64868 || |||||||| Sbjct 244672 GCGACTTTGCGGT 244660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296605617200