Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq23 194 2e-44
seq134 192 7e-44
seq35 161 1e-34
seq234 152 6e-32
seq6 145 9e-30
seq111 95.1 1e-14
>seq23
Length=1278451
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || |||||||| || || || || ||||||||| ||
Sbjct 1263633 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263574
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1263573 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263514
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| || ||||||| ||||| || | ||||| ||
Sbjct 1263513 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263454
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||| | || ||||||| ||||||||
Sbjct 1263453 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263407
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || |||||||| || || || || ||||||||| ||
Sbjct 1263861 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263802
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1263801 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263742
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| || ||||||| ||||| || | ||||| ||
Sbjct 1263741 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263682
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||| | || ||||||| ||||||||
Sbjct 1263681 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263635
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || |||||||| || || || || ||||||||| ||
Sbjct 1264089 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1264030
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1264029 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263970
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| || ||||||| ||||| || | ||||| ||
Sbjct 1263969 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263910
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||| | || ||||||| ||||||||
Sbjct 1263909 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1263863
Score = 190 bits (210), Expect = 2e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || |||||||| || || || || ||||||||| ||
Sbjct 1263405 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263346
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || ||||||| || || ||||||||||||||||| || |||||||||
Sbjct 1263345 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263286
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| || ||||||| ||||| || | ||||| ||
Sbjct 1263285 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263226
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| ||||| || ||||| ||| | || ||||||| |||||||||
Sbjct 1263225 ATCCAGAAGGAGTCTACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGA 1263178
Score = 179 bits (198), Expect = 4e-40
Identities = 184/239 (77%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 27394 AATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAG 27453
|||| ||| | |||||| |||||||| || || | || ||||| || || || | |||
Sbjct 1264328 AATAATACAA-AATGCAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAG 1264270
Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513
|||||| || || | ||||| || ||||||| || || |||||||||||||||||
Sbjct 1264269 GTTGAGCCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATC 1264210
Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573
|| ||||||||||||||||| || || || || ||||| || ||||||| ||||| ||
Sbjct 1264209 CCCCCAGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTT 1264150
Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| || |||| ||||| |||||||| ||| | || ||||||| ||||||||
Sbjct 1264149 TCTGACTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 1264091
>seq134
Length=322322
Score = 192 bits (212), Expect = 7e-44
Identities = 310/444 (70%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020
|||| ||||| || | ||| ||| ||||||||||| |||||||||||| || | |
Sbjct 20896 AGCGCTCCATCCCCAGCCTGGTGGATGGCCTCAAGCCGGGACAGCGCAAGGTCATGTTCA 20837
Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080
||||| ||||| ||| | | || |||||||||| |||||||| || | |||||
Sbjct 20836 CCTGCTTCAAGCGCAACGACAAGCGCGAGGTGAAGGTGGCCCAGCTGTCTGGTTCCGTGG 20777
Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140
| ||| |||| || ||||||||||||| || |||||| || || || || || |
Sbjct 20776 CTGAGATGTCGGCATACCACCACGGCGAGGTTTCCCTCCAGATGACTATCGTGAATCTGG 20717
Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200
| ||||||| ||||| | || ||| | ||||| || ||||| || ||||| || |
Sbjct 20716 CCCAGAACTACGTCGGCTCGAACAACATCAACTTGCTGGAGCCGCGCGGTCAGTTCGGTA 20657
Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGC 32258
| ||| | | || |||||||| ||| ||| | |||||||| ||||| | ||||
Sbjct 20656 CTCGGTTGACGGGCGGCAAGGACTGTGCCAGCGCTCGTTACATTTTCACATTGATGTCGC 20597
Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318
|| ||||||| || | | |||| ||||||| || |||| ||||| | ||
Sbjct 20596 CGCT--GACGCGCCTCATCTACCACCCCCTGGACGATCCGCTGCTGGAGTACCAGACCGA 20539
Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378
||| || ||| || ||||||| ||| || || | | |||||| | |||||||
Sbjct 20538 TGATGGCCAGAGGATCGAGCCATTGTGGTATCTGCCCATCATACCGATGGTTCTGGTGAA 20479
Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402
||| || || |||||||| || ||
Sbjct 20478 CGGAGCCGAGGGCATCGGCACCGG 20455
>seq35
Length=832945
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || | ||||| ||| |
Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773530
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || ||||| || ||||| || ||||| | ||||| | | ||||| ||
Sbjct 773529 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773470
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||| | ||| | || |||||||||||||||||
Sbjct 773469 ATCCAGAAGGAGTCGACTTTGCATTTGGTATTGCGTCTTCGCGGTGG 773423
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || || ||||| ||| |
Sbjct 773877 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 773818
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 773817 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773758
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| ||
Sbjct 773757 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773698
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||| | ||| | || | || || ||||||||
Sbjct 773697 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 773651
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || || ||||| ||| |
Sbjct 774105 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTCG 774046
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 774045 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 773986
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| ||
Sbjct 773985 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 773926
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||| | ||| | || | || || ||||||||
Sbjct 773925 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 773879
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || || ||||| ||| |
Sbjct 774333 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCCTCGAGGTCGAGCCCTCG 774274
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 774273 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 774214
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| || ||||| | ||||| | | ||||| ||
Sbjct 774213 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAAC 774154
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||| | ||| | || | || || ||||||||
Sbjct 774153 ATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGG 774107
>seq234
Length=227530
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| ||||| |||||||| || ||||||||||| || |
Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 10076
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | |||| | || || || ||||||||||| || |||||||||||||| ||
Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || || ||||| || ||| | || |||| || || ||| | || |||||
Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| ||||| | ||| | || |||| ||||| |||||
Sbjct 9955 ATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGG 9909
>seq6
Length=3104374
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| || || || || |||||||| || || | ||||| ||| |
Sbjct 2898253 AATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 2898312
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| ||
Sbjct 2898313 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 2898372
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || || || || ||||| || ||||||| || || || | ||||| ||
Sbjct 2898373 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 2898432
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || | || | || || || |||||
Sbjct 2898433 CATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 2898480
>seq111
Length=362587
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/133 (77%), Gaps = 4/133 (3%)
Strand=Plus/Minus
Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCAT-TCTGT-TCTATTTTCTGGCTAAAAAAGCGGG 64795
||||||||||| ||||| | | | || | || || || || ||||| || ||||| |
Sbjct 244790 GTGGAAGGAATCTTCTT--CAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTG 244733
Query 64796 GCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACC 64855
|||| ||||| |||||| | || || ||||||||||||||||| ||||| || ||||||
Sbjct 244732 GCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTGACGAAGGTCTCCACT 244673
Query 64856 AAGAATTTGCGGT 64868
|| ||||||||
Sbjct 244672 GCGACTTTGCGGT 244660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570296605617200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |