Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq162 167 2e-36
seq3 87.8 1e-12
>seq162
Length=246154
Score = 167 bits (184), Expect = 2e-36
Identities = 451/677 (67%), Gaps = 20/677 (3%)
Strand=Plus/Minus
Query 29797 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29856
||| || || | | |||| ||| | | || || |||| | ||||| |||| ||||
Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208
Query 29857 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAG 29916
| || ||||| ||| || || || || | | || || || |||| ||| ||||
Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148
Query 29917 GTTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29975
| |||||||||| || |||| ||| |||||| | || || || ||||||| ||||| |
Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089
Query 29976 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA 30035
| | ||| ||||||||| ||||| || || || |||||||| | || ||| || |
Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029
Query 30036 GCTGACACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGC-GTGGCA 30087
|||| || ||||||||||| ||| ||||| || || || ||| ||||||
Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTG-TGCAAGGCAGTGGCA 67971
Query 30088 CGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT 30147
|| || | ||||| | ||| ||| ||||||||| ||| |||||||| |
Sbjct 67970 GGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACG 67911
Query 30148 GTCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATC 30205
|| ||| || | |||||| ||||| | | | ||| ||| || | ||| |
Sbjct 67910 ATCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTG 67853
Query 30206 CCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCC 30264
|| |||||| | | || || | ||||| || || || || | |||||| || ||
Sbjct 67852 CCGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAAGTGTCGCCACTGAAAGCC 67794
Query 30265 GTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 30324
|| || || ||||| |||||| | | | || | | |||| |||||| | ||| ||
Sbjct 67793 ATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTC 67734
Query 30325 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCAGAGAGCTCTTTGGAGTTTG 30383
||||| | |||| | ||||| || | || |||| | | || ||| | | | ||
Sbjct 67733 TCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTG 67675
Query 30384 TGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGG 30443
| || || ||||| ||||||||||||||||| ||| | || |||| |||||
Sbjct 67674 TCTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGG 67615
Query 30444 TCGTGAGGAGGGGAAAC 30460
| || || |||||||||
Sbjct 67614 TGGTCAGCAGGGGAAAC 67598
>seq3
Length=3134003
Score = 87.8 bits (96), Expect = 1e-12
Identities = 115/151 (76%), Gaps = 10/151 (7%)
Strand=Plus/Plus
Query 52761 CCAGAGATGGGCGACAAGTTTGCGTC-GTTCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52819
||| |||| |||||||||||||| || |||||| ||| ||||| |||||||| | |
Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806
Query 52820 CCTG-ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 52875
|| | | | |||||||| ||||||||| ||| | || || ||| ||||| ||||||
Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865
Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906
|||| ||||| ||| | ||||| | |||||
Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406300818058020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |