Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq162 167 2e-36 seq3 87.8 1e-12 >seq162 Length=246154 Score = 167 bits (184), Expect = 2e-36 Identities = 451/677 (67%), Gaps = 20/677 (3%) Strand=Plus/Minus Query 29797 AAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTC 29856 ||| || || | | |||| ||| | | || || |||| | ||||| |||| |||| Sbjct 68267 AAATTCTTCAATGTTCTCGACCTTTCGCTTGATTTTCAGCTTTGGAAACGGTCGTGGCTT 68208 Query 29857 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAG 29916 | || ||||| ||| || || || || | | || || || |||| ||| |||| Sbjct 68207 GCGTTCTAGCTGCTCCTTTAGTGGATCAACATGGTTAAGATACACATGAGTGTCGCCCAT 68148 Query 29917 GTTGTGGACAAACTCTCCCGG-TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29975 | |||||||||| || |||| ||| |||||| | || || || ||||||| ||||| | Sbjct 68147 GGTGTGGACAAAATCGCCCGTCTTCAAGCCCGTT-ACATGTGCAATCATGTGGGTGAGCA 68089 Query 29976 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA 30035 | | ||| ||||||||| ||||| || || || |||||||| | || ||| || | Sbjct 68088 GGGCATAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCGCTGATACA 68029 Query 30036 GCTGACACGAGAGCTCTCCGTCG-------CTCACGTAAAACTGACACATGGC-GTGGCA 30087 |||| || ||||||||||| ||| ||||| || || || ||| |||||| Sbjct 68028 GCTGGCAGGAGAGCTCTCC-TCGAGTTTGAGAGACGTAGAATTG-TGCAAGGCAGTGGCA 67971 Query 30088 CGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCT 30147 || || | ||||| | ||| ||| ||||||||| ||| |||||||| | Sbjct 67970 GGGGGGTAATGCCATTTTTGGTATGTCCAGGGGATTCCAGGCGGACATAATGATGCGACG 67911 Query 30148 GTCTTCTGGGTTGTTCCTGATGAGGTCC--ACGGCGTTTTGCAGCTGATCCACCCCCATC 30205 || ||| || | |||||| ||||| | | | ||| ||| || | ||| | Sbjct 67910 ATCGGATGGATTATCCCTGAT--GGTCCTAATTACCTGGCGCAACTGGTCGATTCCCTTG 67853 Query 30206 CCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCC 30264 || |||||| | | || || | ||||| || || || || | |||||| || || Sbjct 67852 CCGCTGTAGTCATCGTCGCAGGTGC-CATACTCGGCACCAAAGTGTCGCCACTGAAAGCC 67794 Query 30265 GTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 30324 || || || ||||| |||||| | | | || | | |||| |||||| | ||| || Sbjct 67793 ATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGTGTGGCCCAGCTTGTCTAGAAACTC 67734 Query 30325 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC-TCAGAGAGCTCTTTGGAGTTTG 30383 ||||| | |||| | ||||| || | || |||| | | || ||| | | | || Sbjct 67733 TCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTTCGCCTGCAAGAGCTTCGCA-TCTG 67675 Query 30384 TGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGG 30443 | || || ||||| ||||||||||||||||| ||| | || |||| ||||| Sbjct 67674 TCTTTCCGGCCACAAACCATAGCAGCTCCTCCACGACCGCCCGAAAGAACACCCGCTTGG 67615 Query 30444 TCGTGAGGAGGGGAAAC 30460 | || || ||||||||| Sbjct 67614 TGGTCAGCAGGGGAAAC 67598 >seq3 Length=3134003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/151 (76%), Gaps = 10/151 (7%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTTGCGTC-GTTCACGGCGCAAAAGGGGACGTGCGGAGCCGT 52819 ||| |||| |||||||||||||| || |||||| ||| ||||| |||||||| | | Sbjct 3112751 CCACAGATCGGCGACAAGTTTGCCTCTCGTCACGG-GCAGAAGGGAACGTGCGG---CAT 3112806 Query 52820 CCTG-ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCA 52875 || | | | |||||||| ||||||||| ||| | || || ||| ||||| |||||| Sbjct 3112807 CCAGTATCGGCAGGAGGATATGCCCTTC-ACATGCGAGGGACTGGCCCCCGATATCATCA 3112865 Query 52876 TCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 |||| ||||| ||| | ||||| | ||||| Sbjct 3112866 TCAATCCCCATGCCATCCCCTCTCGTATGAC 3112896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300818058020