Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq23 138 7e-28
seq35 104 1e-17
seq234 96.9 2e-15
seq6 82.4 5e-11
>seq23
Length=1278451
Score = 138 bits (152), Expect = 7e-28
Identities = 166/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||||||||||| |||||| || ||||| || || ||||| || ||
Sbjct 1264100 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1264159
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 1264160 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1264219
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 1264220 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGT 1264278
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| ||||| || || || ||||||||||| |||||||| |||
Sbjct 1264279 GATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 1264321
Score = 131 bits (144), Expect = 1e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||||||||||| |||||| || ||||| || || ||||| || ||
Sbjct 1263416 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263475
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 1263476 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263535
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 1263536 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGT 1263594
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| ||||| | || |||||||| ||||||||
Sbjct 1263595 GATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 131 bits (144), Expect = 1e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||||||||||| |||||| || ||||| || || ||||| || ||
Sbjct 1263644 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263703
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 1263704 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263763
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 1263764 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGT 1263822
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| ||||| | || |||||||| ||||||||
Sbjct 1263823 GATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 131 bits (144), Expect = 1e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||||||||||||| |||||| || ||||| || || ||||| || ||
Sbjct 1263872 AGACGCAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263931
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 1263932 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263991
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 1263992 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGT 1264050
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| ||||| | || |||||||| ||||||||
Sbjct 1264051 GATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 127 bits (140), Expect = 1e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||||||||||||| |||||| || ||||| || || ||||| || ||
Sbjct 1263188 AGACGCAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGG 1263247
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 1263248 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCC 1263307
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||| ||||| ||| || |||| |||
Sbjct 1263308 TTGTCCTGGATC-TTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGT 1263366
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| ||||| | || |||||||| ||||||||
Sbjct 1263367 GATGGTTTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
>seq35
Length=832945
Score = 104 bits (114), Expect = 1e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||||||| |||||||| | ||| |||||| || ||||| || || |
Sbjct 773421 CGCCACCGCGAAGACGCAATACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGG 773480
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || |||| || || || || |||||||| || |||||||| || || || |
Sbjct 773481 ACAAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGG 773540
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||| || | || || | || ||||| | |||
Sbjct 773541 GAATGCCCTCCTTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 773599
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| |||| ||| || || || || || | || ||||| || |||||||||
Sbjct 773600 ACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 773650
Score = 89.7 bits (98), Expect = 3e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | ||||||||| | ||| |||||| || ||||| || || || | || ||
Sbjct 774116 AGGCGGAGCACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 774175
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || |||||||| || || || || | ||||||
Sbjct 774176 CCGTCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 774235
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | || ||||| | ||| || || | |||
Sbjct 774236 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 774294
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||| || || || || | || ||||| || ||||||||||||
Sbjct 774295 TATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 774337
>seq234
Length=227530
Score = 96.9 bits (106), Expect = 2e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||| |||| |||||||| | ||| |||||| |||||||||||||| |
Sbjct 9907 CGCCACCACGAAGCCGCAGTACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAG 9966
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| |||||||| | ||||| | |||||| || || || || || || ||||| || || |
Sbjct 9967 ATAGTGTTCGGCCATCTTCCAATTGTTTGCCAGCGAAGATCAAGCGTTGTTGATCTGGAG 10026
Query 34598 GCACTCCCTCCTTGTC 34613
| | ||| || |||||
Sbjct 10027 GAATTCCTTCTTTGTC 10042
>seq6
Length=3104374
Score = 82.4 bits (90), Expect = 5e-11
Identities = 153/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || || |||||| || ||||| || || || || || ||
Sbjct 2898471 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 2898412
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || | |||||| || || || || | ||||||
Sbjct 2898411 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 2898352
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | || ||||| | ||| || |||| |||
Sbjct 2898351 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 2898293
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || || || || | |||||||||||||| ||||| ||
Sbjct 2898292 GATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314722177790855
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