Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq234 176 4e-39 seq252 168 6e-37 seq35 147 2e-30 seq23 131 1e-25 seq6 127 2e-24 >seq234 Length=227530 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| |||||||| || || || |||||| | || |||||||| || ||||||| Sbjct 10137 CCATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGT 10078 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | || || | |||||| || ||||| ||||||||||| || || || |||| Sbjct 10077 CGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATC 10018 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| || || || | ||| ||||||||||||||||| | || | || ||||| | Sbjct 10017 AACAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATA 9958 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||| |||||||| ||||| |||||||| |||| | || |||||| Sbjct 9957 ACATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGGC 9908 >seq252 Length=176535 Score = 168 bits (186), Expect = 6e-37 Identities = 204/277 (74%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGAT 135524 |||||| |||||||| |||| || | ||| || |||||| ||||| |||||||||| Sbjct 29761 ATGACC---TGTGGAACTCGGCCCAGCTGCAACTGGTGCGAGAGGGCAAGATGCACGGAT 29817 Query 135525 TTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGC 135584 || |||||||||| ||||| || |||||| | || ||| | || |||| | | |||||| Sbjct 29818 TTCTGCGCATGTACTGGGCCAAGAAGATACTCGAGTGGACGGCCACGCCGGAACAGGCGC 29877 Query 135585 TACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCT 135644 | | || | || | | || || | |||||| |||| || |||||| | || |||| Sbjct 29878 TCGAGTACTCGATTCTGCTCAACGACAAGTACAGTCTAGACGGGCGCGATCCCAACGGCT 29937 Query 135645 ACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAG 135704 | || || || |||||||| ||| | || ||||||| || ||||||||||| Sbjct 29938 ATGTGGGCTGCATGTGGTCCATTGGGGGCATACACGACATGGGCTGGAAGGAGCGTGCGA 29997 Query 135705 TGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 | ||||| ||||||||||| ||||||||| | || || Sbjct 29998 TATTTGGAAAGATTCGCTACATGAACTATCAAGGATG 30034 >seq35 Length=832945 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || || || Sbjct 773878 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTC 773819 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 773818 GGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 773759 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| || |||| ||| | || | ||||| ||||| Sbjct 773758 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 773699 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| || |||||||| | || |||| |||||||| Sbjct 773698 CATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGCAT 773648 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || || || Sbjct 774106 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCTC 774047 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 774046 GGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 773987 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| || |||| ||| | || | ||||| ||||| Sbjct 773986 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 773927 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| || |||||||| | || |||| |||||||| Sbjct 773926 CATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGCAT 773876 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || || || Sbjct 774334 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCCTCGAGGTCGAGCCCTC 774275 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 774274 GGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 774215 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| || |||| ||| | || | ||||| ||||| Sbjct 774214 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 774155 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| || |||||||| | || |||| |||||||| Sbjct 774154 CATCCAGAAGGAGTCGACTTTGCATTTGGTGCTCCGCCTGCGCGGTGGCAT 774104 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || | || || || || || Sbjct 773650 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 773591 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 773590 GGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 773531 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | |||||||| || |||| ||| | || | ||||| ||||| Sbjct 773530 GCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 773471 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||||||||| || |||||||| |||||| | || |||||| Sbjct 773470 CATCCAGAAGGAGTCGACTTTGCATTTGGTATTGCGTCTTCGCGGTGGC 773422 >seq23 Length=1278451 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||||||||| | || || || || || || || ||| Sbjct 1263405 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263346 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 1263345 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263286 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || |||| || |||||| Sbjct 1263285 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263226 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | |||||||| ||||| | || ||||| || Sbjct 1263225 ATCCAGAAGGAGTCTACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGAAT 1263176 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||||||||| | || || || || || || || ||| Sbjct 1263633 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263574 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 1263573 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263514 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || |||| || |||||| Sbjct 1263513 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263454 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | |||||||| ||||| | || ||||| || Sbjct 1263453 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGTAT 1263404 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||||||||| | || || || || || || || ||| Sbjct 1263861 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1263802 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 1263801 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263742 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || |||| || |||||| Sbjct 1263741 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263682 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | |||||||| ||||| | || ||||| || Sbjct 1263681 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGTAT 1263632 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||||||||| | || || || || || || || ||| Sbjct 1264089 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAAACCATCACCCTGGAGGTTGAGCCATCC 1264030 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 1264029 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1263970 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || |||| || |||||| Sbjct 1263969 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTACAAC 1263910 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | |||||||| ||||| | || ||||| || Sbjct 1263909 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGTAT 1263860 >seq6 Length=3104374 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || |||||| | || || | || || || || || Sbjct 2898254 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 2898313 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 2898314 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 2898373 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || | ||||| |||||| Sbjct 2898374 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 2898433 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | || |||| ||||| || Sbjct 2898434 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTAT 2898483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907880411200