Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq162 120 3e-22 >seq162 Length=246154 Score = 120 bits (132), Expect = 3e-22 Identities = 417/647 (64%), Gaps = 24/647 (4%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||| || || || |||| || || || || ||||||||||| ||| Sbjct 67599 TTTCCCCTGCTGACCACCAAGCGGGTGTTCTTTCGGGCGGTCGTGGAGGAGCTGCTATGG 67658 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGG---AGCTCTCGTCCCGGGGG-----GTGAAGA 34331 || ||| ||| || || | | |||||| | | || | ||| | | Sbjct 67659 TTTGTG------GCCGGAAAGACAGATGCGAAGCTCTTG--CAGGCGAAGAACGTGCACA 67710 Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391 | ||||| | || | | |||| ||||| ||||||| ||| | | || | | Sbjct 67711 TTTGGGATGGCAACAGCACCAGAGAGTTTCTAGACAAGCTGGGCCACACGGACCGCGCCG 67770 Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451 ||| || |||| || ||||| || || |||||| |||||||||| || |||||| | Sbjct 67771 TGGGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCA 67830 Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 |||| | ||||| || ||||| |||||| ||| | || || ||| Sbjct 67831 CCTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCA 67890 Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | | | || || || | | ||| | |||| ||| ||||| || ||| | | Sbjct 67891 TCAGGGATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACATAC 67950 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT------ 34624 | ||||| | ||||| |||||| ||| ||| |||||||||||| | | Sbjct 67951 CAAAAATGGCATTACCCCCCTGCCACTGCCT-TGCACAATTCTACGTCTCTCAAACTCGA 68009 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| ||||||||||| ||||| || | |||||||| | || ||||| ||| Sbjct 68010 GGAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTC 68069 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 ||||| || || || |||||||| ||||||| || ||||| ||| ||| | Sbjct 68070 AACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACG 68129 Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804 || || | || || || |||| || | ||| | || || ||||| | || | || Sbjct 68130 GGCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTA 68189 Query 34805 CGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | ||||| |||| |||| |||||||| || |||| ||||| Sbjct 68190 AAGGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAAT 68236 Score = 120 bits (132), Expect = 3e-22 Identities = 417/647 (64%), Gaps = 24/647 (4%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 ||||| |||| || |||||||| |||| |||| ||||| | || | || | Sbjct 68236 ATTTTCAGCTTTGGAAACGGTCGTGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACA 68177 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||| || || | ||| | || |||| || || || | || || | ||| ||| Sbjct 68176 TGGTTAAGATACACATGAGTGTCGCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCC 68117 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || ||||||| |||||||| || || || |||||||| ||||| || Sbjct 68116 GTTACATGTGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCC 68057 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCG 6727 | |||||||| | || ||||| ||||||||||| ||||| || | | | Sbjct 68056 AGGCCCATGTCGGCGCTCCGCTGATACAGCTGGCAGGAGAGCTCTCCTCGAGTTTGAGAG 67997 Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||||| ||| ||| |||||| ||||| | ||||| || | ||| || Sbjct 67996 ACGTAGAATTGTGCA-AGGCAGTGGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGGG 67938 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| ||| |||| | ||| | | || || || | | | ||| || || Sbjct 67937 ATTCCAGGCGGACATAATGATGCGACGATCGGATGGATTATCCCTGATGGTCCTAATTAC 67878 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | ||| |||||| ||||| || ||||| | |||| | |||||| || Sbjct 67877 CTGGCGCAACTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCATACTCGGC 67818 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||||||| |||||| || || ||||| || |||| || ||| | | || | Sbjct 67817 ACCAAAGTGTCGCCACTGAAAGCCATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGT 67758 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC-----C 7021 | ||| ||||||| ||||| |||| | | || | ||||| || | ||| Sbjct 67757 GTGGCCCAGCTTGTCTAGAAACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTT 67698 Query 7022 CCCCGGGACGAGAGCT---CCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 | || | | |||||| | | || || ||| ||| ||||| ||||||||| Sbjct 67697 CGCCTG--CAAGAGCTTCGCATCTGTCTTTCCGGC------CACAAACCATAGCAGCTCC 67646 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || || || || || |||| || || || |||||||| ||||| Sbjct 67645 TCCACGACCGCCCGAAAGAACACCCGCTTGGTGGTCAGCAGGGGAAA 67599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251557653200