Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq162 120 3e-22
>seq162
Length=246154
Score = 120 bits (132), Expect = 3e-22
Identities = 417/647 (64%), Gaps = 24/647 (4%)
Strand=Plus/Plus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
||||| |||||||| || || || |||| || || || || ||||||||||| |||
Sbjct 67599 TTTCCCCTGCTGACCACCAAGCGGGTGTTCTTTCGGGCGGTCGTGGAGGAGCTGCTATGG 67658
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGG---AGCTCTCGTCCCGGGGG-----GTGAAGA 34331
|| ||| ||| || || | | |||||| | | || | ||| | |
Sbjct 67659 TTTGTG------GCCGGAAAGACAGATGCGAAGCTCTTG--CAGGCGAAGAACGTGCACA 67710
Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391
| ||||| | || | | |||| ||||| ||||||| ||| | | || | |
Sbjct 67711 TTTGGGATGGCAACAGCACCAGAGAGTTTCTAGACAAGCTGGGCCACACGGACCGCGCCG 67770
Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451
||| || |||| || ||||| || || |||||| |||||||||| || |||||| |
Sbjct 67771 TGGGAGATCTGGGTCCTGTCTATGGCTTTCAGTGGCGACACTTTGGTGCCGAGTATGGCA 67830
Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511
|||| | ||||| || ||||| |||||| ||| | || || |||
Sbjct 67831 CCTGCGACGATGACTACAGCGGCAAGGGAATCGACCAGTTGCGCCAGGTAATTAGGACCA 67890
Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571
| | | || || || | | ||| | |||| ||| ||||| || ||| | |
Sbjct 67891 TCAGGGATAATCCATCCGATCGTCGCATCATTATGTCCGCCTGGAATCCCCTGGACATAC 67950
Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT------ 34624
| ||||| | ||||| |||||| ||| ||| |||||||||||| | |
Sbjct 67951 CAAAAATGGCATTACCCCCCTGCCACTGCCT-TGCACAATTCTACGTCTCTCAAACTCGA 68009
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||| ||||||||||| ||||| || | |||||||| | || ||||| |||
Sbjct 68010 GGAGAGCTCTCCTGCCAGCTGTATCAGCGGAGCGCCGACATGGGCCTGGGCGTGCCCTTC 68069
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744
||||| || || || |||||||| ||||||| || ||||| ||| ||| |
Sbjct 68070 AACATCGCCTCCTATGCCCTGCTCACCCACATGATTGCACATGTAACGGGCTTGAAGACG 68129
Query 34745 GGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTC 34804
|| || | || || || |||| || | ||| | || || ||||| | || | ||
Sbjct 68130 GGCGATTTTGTCCACACCATGGGCGACACTCATGTGTATCTTAACCATGTTGATCCACTA 68189
Query 34805 CGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851
| ||||| |||| |||| |||||||| || |||| |||||
Sbjct 68190 AAGGAGCAGCTAGAACGCAAGCCACGACCGTTTCCAAAGCTGAAAAT 68236
Score = 120 bits (132), Expect = 3e-22
Identities = 417/647 (64%), Gaps = 24/647 (4%)
Strand=Plus/Minus
Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553
||||| |||| || |||||||| |||| |||| ||||| | || | || |
Sbjct 68236 ATTTTCAGCTTTGGAAACGGTCGTGGCTTGCGTTCTAGCTGCTCCTTTAGTGGATCAACA 68177
Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613
||||| || || | ||| | || |||| || || || | || || | ||| |||
Sbjct 68176 TGGTTAAGATACACATGAGTGTCGCCCATGGTGTGGACAAAATCGCCCGTCTTCAAGCCC 68117
Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673
||||| || ||||||| |||||||| || || || |||||||| ||||| ||
Sbjct 68116 GTTACATGTGCAATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAAGGGCACGCCC 68057
Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCG 6727
| |||||||| | || ||||| ||||||||||| ||||| || | | |
Sbjct 68056 AGGCCCATGTCGGCGCTCCGCTGATACAGCTGGCAGGAGAGCTCTCCTCGAGTTTGAGAG 67997
Query 6728 ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786
||||||||||| ||| ||| |||||| ||||| | ||||| || | ||| ||
Sbjct 67996 ACGTAGAATTGTGCA-AGGCAGTGGCAGGGGGGTAATGCCATTTTTGGTATGTCCAGGGG 67938
Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846
||||| ||| |||| | ||| | | || || || | | | ||| || ||
Sbjct 67937 ATTCCAGGCGGACATAATGATGCGACGATCGGATGGATTATCCCTGATGGTCCTAATTAC 67878
Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906
| ||| |||||| ||||| || ||||| | |||| | |||||| ||
Sbjct 67877 CTGGCGCAACTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCATACTCGGC 67818
Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966
|||||||||| |||||| || || ||||| || |||| || ||| | | || |
Sbjct 67817 ACCAAAGTGTCGCCACTGAAAGCCATAGACAGGACCCAGATCTCCCACGGCGCGGTCCGT 67758
Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC-----C 7021
| ||| ||||||| ||||| |||| | | || | ||||| || | |||
Sbjct 67757 GTGGCCCAGCTTGTCTAGAAACTCTCTGGTGCTGTTGCCATCCCAAATGTGCACGTTCTT 67698
Query 7022 CCCCGGGACGAGAGCT---CCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078
| || | | |||||| | | || || ||| ||| ||||| |||||||||
Sbjct 67697 CGCCTG--CAAGAGCTTCGCATCTGTCTTTCCGGC------CACAAACCATAGCAGCTCC 67646
Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125
|| || || || || |||| || || || |||||||| |||||
Sbjct 67645 TCCACGACCGCCCGAAAGAACACCCGCTTGGTGGTCAGCAGGGGAAA 67599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448251557653200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |