Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01] 1,935 sequences; 181,868,570 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq35 96.9 2e-15 seq234 84.2 2e-11 >seq35 Length=832945 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || |||||||| || || |||| Sbjct 773556 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAG 773497 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| ||| Sbjct 773496 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTATTG 773437 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | || || |||| Sbjct 773436 CGTCTTCGCGGTGGCG 773421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || ||||| ||||| || || |||| Sbjct 773784 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 773725 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| | Sbjct 773724 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 773665 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 773664 CGCCTGCGCGGTGGC 773650 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || ||||| ||||| || || |||| Sbjct 774012 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 773953 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| | Sbjct 773952 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 773893 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 773892 CGCCTGCGCGGTGGC 773878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || ||||| ||||| || || |||| Sbjct 774240 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 774181 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| | Sbjct 774180 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 774121 Query 28003 CGTTTGCGTGGCGGC 28017 || |||| || ||| Sbjct 774120 CGCCTGCGCGGTGGC 774106 >seq234 Length=227530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || ||||| || || || || |||| |||||| || Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAA----CC 10080 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||| |||| |||||| || || ||||||||||| |||| | Sbjct 10079 GTCGGA-TACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAG 10021 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || || || || || ||||||||||| || | || | | || |||| Sbjct 10020 ATCAACAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATT 9961 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 | ||||| || || ||| ||| ||||||||||| |||| | ||||| |||| Sbjct 9960 ATAACATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGGCG 9907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854007763745