Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq35 96.9 2e-15
seq234 84.2 2e-11
>seq35
Length=832945
Score = 96.9 bits (106), Expect = 2e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || || |||||||| || || ||||
Sbjct 773556 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAG 773497
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| |||
Sbjct 773496 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTATTG 773437
Query 28003 CGTTTGCGTGGCGGCG 28018
||| | || || ||||
Sbjct 773436 CGTCTTCGCGGTGGCG 773421
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || ||||| ||||| || || ||||
Sbjct 773784 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 773725
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| |
Sbjct 773724 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 773665
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 773664 CGCCTGCGCGGTGGC 773650
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || ||||| ||||| || || ||||
Sbjct 774012 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 773953
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| |
Sbjct 773952 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 773893
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 773892 CGCCTGCGCGGTGGC 773878
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || || |||| || ||||| || || ||||| ||||| || || ||||
Sbjct 774240 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAG 774181
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||| ||||||||||| || ||| |||||||||||||| |
Sbjct 774180 GACGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCATTTGGTGCTC 774121
Query 28003 CGTTTGCGTGGCGGC 28017
|| |||| || |||
Sbjct 774120 CGCCTGCGCGGTGGC 774106
>seq234
Length=227530
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/234 (68%), Gaps = 10/234 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || || ||||| || || || || |||| |||||| ||
Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAA----CC 10080
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| || ||| |||| |||||| || || ||||||||||| |||| |
Sbjct 10079 GTCGGA-TACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAG 10021
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| || || || || || ||||||||||| || | || | | || ||||
Sbjct 10020 ATCAACAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATT 9961
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018
| ||||| || || ||| ||| ||||||||||| |||| | ||||| ||||
Sbjct 9960 ATAACATTCAGAAGGAGTCCACCTTGCATTTGGTACTGCGGCTTCGTGGTGGCG 9907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355854007763745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |