Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq23 96.9 3e-15
seq6 84.2 2e-11
>seq23
Length=1278451
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || || || || | ||| || || | || ||
Sbjct 1264108 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1264167
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 1264168 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1264227
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | ||| || |||| ||||| ||||
Sbjct 1264228 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAAGGTGATGGTTTT 1264287
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| |||| ||||| |||||||| ||||| ||
Sbjct 1264288 GCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 1264320
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || || || || | ||| || || | || ||
Sbjct 1263424 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263483
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 1263484 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263543
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | ||| || |||| ||||| ||||
Sbjct 1263544 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263603
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 1263604 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263633
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || || || || | ||| || || | || ||
Sbjct 1263652 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263711
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 1263712 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263771
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | ||| || |||| ||||| ||||
Sbjct 1263772 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263831
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 1263832 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263861
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || || || || | ||| || || | || ||
Sbjct 1263880 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263939
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 1263940 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263999
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | ||| || |||| ||||| ||||
Sbjct 1264000 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1264059
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 1264060 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1264089
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || || || | ||| || || | || ||
Sbjct 1263196 CACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 1263255
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || |||||||||||||| | ||| | | ||| ||||||
Sbjct 1263256 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1263315
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | || | | || ||| | ||| || |||| ||||| ||||
Sbjct 1263316 GATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCAACCTCCAGGGTGATGGTTTT 1263375
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| || || |||||||| |||||
Sbjct 1263376 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 1263405
>seq6
Length=3104374
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || || ||| || || || || || |||| || || || |
Sbjct 2898469 GCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 2898410
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| || || || ||||||||||| || | ||| | || ||| ||
Sbjct 2898409 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 2898350
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| || | | || || | ||| || |||| |||||
Sbjct 2898349 GTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 2898290
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || || || || ||||| ||||| |||||||| ||
Sbjct 2898289 GGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATTTT 2898251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429535470106655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |