Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20obscura_20[genbank_20GCA_5F002217835.1_202017-07-01]
1,935 sequences; 181,868,570 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 2e-22
seq234 116 3e-21
seq23 89.7 3e-13
>seq35
Length=832945
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| | || || || || ||
Sbjct 773649 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCG 773590
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || ||||||||
Sbjct 773589 GACACCATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGATCA 773531
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || ||||||||||| || ||||| |||| ||| ||||| ||| |||||
Sbjct 773530 GCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 773471
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||| || || ||||| || || ||||| || ||
Sbjct 773470 CATCCAGAAGGAGTCGACTTTGCATTTGGTATT 773438
>seq234
Length=227530
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| ||||| || || || ||||| || || || | ||
Sbjct 10135 ATGCAGATCTTTGTAAAGACCCTTACGGGCAAGACCATAACTCTTGAGGTCGAACCGTCG 10076
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| | ||| || ||| ||||||||||| | || |||||||||
Sbjct 10075 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 10016
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || || || ||||||||| ||||||| | || || || ||||| |||
Sbjct 10015 CAACGCTTGATCTTCGCTGGCAAACAATTGGAAGATGGCCGAACACTATCTGATTATAAC 9956
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || |||||||| || ||||| ||
Sbjct 9955 ATTCAGAAGGAGTCCACCTTGCATTTGGT 9927
>seq23
Length=1278451
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || |||||| | || || ||||| ||||| | || ||||| |
Sbjct 1264320 AAAATGCAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACCTTGGAGGTTGAGCCA 1264261
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||| | | || || || ||||| || || | || |||||
Sbjct 1264260 TCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 1264201
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || || |||||||| || ||||| || | || ||| | || |||
Sbjct 1264200 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACTCTTTCTGACTAC 1264141
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||| || || |||||||| | ||||| ||
Sbjct 1264140 AACATCCAGAAGGAGTCCACTCTCCATTTGGT 1264109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338001628782980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |